Back to Multiple platform build/check report for BioC 3.17:   simplified   long
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This page was generated on 2023-10-04 11:36:24 -0400 (Wed, 04 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 632/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
enrichplot 1.20.3  (landing page)
Guangchuang Yu
Snapshot Date: 2023-10-03 14:00:15 -0400 (Tue, 03 Oct 2023)
git_url: https://git.bioconductor.org/packages/enrichplot
git_branch: RELEASE_3_17
git_last_commit: aafbd01
git_last_commit_date: 2023-09-15 12:19:29 -0400 (Fri, 15 Sep 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.6.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

CHECK results for enrichplot on palomino3


To the developers/maintainers of the enrichplot package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/enrichplot.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: enrichplot
Version: 1.20.3
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:enrichplot.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings enrichplot_1.20.3.tar.gz
StartedAt: 2023-10-04 01:55:01 -0400 (Wed, 04 Oct 2023)
EndedAt: 2023-10-04 01:58:16 -0400 (Wed, 04 Oct 2023)
EllapsedTime: 194.4 seconds
RetCode: 0
Status:   OK  
CheckDir: enrichplot.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:enrichplot.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings enrichplot_1.20.3.tar.gz
###
##############################################################################
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* using log directory 'F:/biocbuild/bbs-3.17-bioc/meat/enrichplot.Rcheck'
* using R version 4.3.1 (2023-06-16 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.2.0
    GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'enrichplot/DESCRIPTION' ... OK
* this is package 'enrichplot' version '1.20.3'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'enrichplot' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
gseaplot  4.42   0.33   16.47
ridgeplot 3.78   0.22   15.03
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

enrichplot.Rcheck/00install.out

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###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL enrichplot
###
##############################################################################
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'enrichplot' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (enrichplot)

Tests output


Example timings

enrichplot.Rcheck/enrichplot-Ex.timings

nameusersystemelapsed
barplot.enrichResult1.990.192.25
cnetplot000
color_palette000
dotplot000
drag_network000
emapplot000
goplot000
gseaplot 4.42 0.3316.47
heatplot1.020.001.01
pairwise_termsim000
ridgeplot 3.78 0.2215.03
ssplot000
treeplot000
upsetplot-methods1.330.071.41