Multiple platform build/check report for BioC 3.17 - BUILD results for edge on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.1 LTS)	x86_64	R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences"	4547
palomino3	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences"	4308
merida1	macOS 10.14.6 Mojave	x86_64	R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences"	4301
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Hostname

Arch (*)

R version

Installed pkgs

nebbiolo1

Linux (Ubuntu 22.04.1 LTS)

x86_64

R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences"

4547

palomino3

Windows Server 2022 Datacenter

x64

R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences"

4308

merida1

macOS 10.14.6 Mojave

x86_64

R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences"

4301

Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for edge on merida1

To the developers/maintainers of the edge package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/edge.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

edge 2.31.0 (landing page)
John D. Storey , Andrew J. Bass

Snapshot Date: 2023-03-28 14:00:22 -0400 (Tue, 28 Mar 2023)

git_url: https://git.bioconductor.org/packages/edge

git_branch: devel

git_last_commit: b84958c

git_last_commit_date: 2022-11-20 15:30:22 -0400 (Sun, 20 Nov 2022)

nebbiolo1

Linux (Ubuntu 22.04.1 LTS) / x86_64

ERROR

skipped

palomino3

Windows Server 2022 Datacenter / x64

ERROR

skipped

merida1

macOS 10.14.6 Mojave / x86_64

ERROR

skipped

Summary

Package: edge

Version: 2.31.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data edge

StartedAt: 2023-03-28 17:39:16 -0400 (Tue, 28 Mar 2023)

EndedAt: 2023-03-28 17:39:25 -0400 (Tue, 28 Mar 2023)

EllapsedTime: 9.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data edge
###
##############################################################################
##############################################################################


* checking for file ‘edge/DESCRIPTION’ ... OK
* preparing ‘edge’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘edge’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 11.0.0 (clang-1100.0.33.17)’
using SDK: ‘’
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include    -fPIC  -Wall -g -O2  -c edge-init.c -o edge-init.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include    -fPIC  -Wall -g -O2  -c edgeKLODP.c -o edgeKLODP.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o edge.so edge-init.o edgeKLODP.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /private/tmp/RtmplAegBh/Rinstd59a20b2a390/00LOCK-edge/00new/edge/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error: objects ‘rowSums’, ‘colSums’, ‘rowMeans’, ‘colMeans’ are not exported by 'namespace:BiocGenerics'
Execution halted
ERROR: lazy loading failed for package ‘edge’
* removing ‘/private/tmp/RtmplAegBh/Rinstd59a20b2a390/edge’
      -----------------------------------
ERROR: package installation failed