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This page was generated on 2023-03-24 11:06:42 -0400 (Fri, 24 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" 4546
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" 4307
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences" 4299
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for dasper on merida1


To the developers/maintainers of the dasper package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/dasper.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 487/2195HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
dasper 1.9.0  (landing page)
David Zhang
Snapshot Date: 2023-03-23 14:00:15 -0400 (Thu, 23 Mar 2023)
git_url: https://git.bioconductor.org/packages/dasper
git_branch: devel
git_last_commit: 7fc89b3
git_last_commit_date: 2022-11-01 11:23:22 -0400 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: dasper
Version: 1.9.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data dasper
StartedAt: 2023-03-23 17:38:49 -0400 (Thu, 23 Mar 2023)
EndedAt: 2023-03-23 17:43:50 -0400 (Thu, 23 Mar 2023)
EllapsedTime: 301.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data dasper
###
##############################################################################
##############################################################################


* checking for file ‘dasper/DESCRIPTION’ ... OK
* preparing ‘dasper’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘dasper.Rmd’ using rmarkdown
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
building whole annotation region map done
2 chromosomes for annotated regions read
Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/8a20a8e56cc_SRR660824_SRS389722_SRX222703_male_lung.bw
Quitting from lines 284-291 (dasper.Rmd) 
Error: processing vignette 'dasper.Rmd' failed with diagnostics:
BiocParallel errors
  1 remote errors, element index: 1
  1 unevaluated and other errors
  first remote error:
Error in eval(expr, envir, enclos): AttributeError: module 'sklearn' has no attribute 'ensemble'


--- failed re-building ‘dasper.Rmd’

SUMMARY: processing the following file failed:
  ‘dasper.Rmd’

Error: Vignette re-building failed.
Execution halted