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This page was generated on 2023-10-16 11:36:54 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 288/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cellbaseR 1.24.0  (landing page)
Mohammed OE Abdallah
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/cellbaseR
git_branch: RELEASE_3_17
git_last_commit: ebbeb0b
git_last_commit_date: 2023-04-25 10:54:01 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.6.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

BUILD results for cellbaseR on merida1


To the developers/maintainers of the cellbaseR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cellbaseR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: cellbaseR
Version: 1.24.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data cellbaseR
StartedAt: 2023-10-15 17:16:30 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 17:17:21 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 50.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data cellbaseR
###
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* checking for file ‘cellbaseR/DESCRIPTION’ ... OK
* preparing ‘cellbaseR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cellbaseR.Rmd’ using rmarkdown

Quitting from lines 58-68 [unnamed-chunk-2] (cellbaseR.Rmd)
Error: processing vignette 'cellbaseR.Rmd' failed with diagnostics:
lexical error: invalid char in json text.
                                       <head>   <title>CellBase</title
                     (right here) ------^

--- failed re-building ‘cellbaseR.Rmd’

SUMMARY: processing the following file failed:
  ‘cellbaseR.Rmd’

Error: Vignette re-building failed.
Execution halted