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This page was generated on 2023-10-16 11:35:58 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 209/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biomvRCNS 1.40.0  (landing page)
Yang Du
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/biomvRCNS
git_branch: RELEASE_3_17
git_last_commit: dd8abf6
git_last_commit_date: 2023-04-25 10:25:50 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  ERROR    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
merida1macOS 12.6.4 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

BUILD results for biomvRCNS on palomino3


To the developers/maintainers of the biomvRCNS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biomvRCNS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biomvRCNS
Version: 1.40.0
Command: chmod a+r biomvRCNS -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data biomvRCNS
StartedAt: 2023-10-15 17:44:49 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 17:44:55 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 5.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r biomvRCNS -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data biomvRCNS
###
##############################################################################
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* checking for file 'biomvRCNS/DESCRIPTION' ... OK
* preparing 'biomvRCNS':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package 'biomvRCNS' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c biomvRCNS.c -o biomvRCNS.o
biomvRCNS.c: In function 'forward':
biomvRCNS.c:153:43: error: 'DOUBLE_XMIN' undeclared (first use in this function); did you mean 'DBL_MIN'?
  153 |                         m_e(F, t, j, T)+= DOUBLE_XMIN;
      |                                           ^~~~~~~~~~~
      |                                           DBL_MIN
biomvRCNS.c:153:43: note: each undeclared identifier is reported only once for each function it appears in
biomvRCNS.c: In function 'viterbi':
biomvRCNS.c:294:36: error: 'DOUBLE_XMAX' undeclared (first use in this function); did you mean 'DBL_MAX'?
  294 |         double obs, prod, maxprod=-DOUBLE_XMAX;
      |                                    ^~~~~~~~~~~
      |                                    DBL_MAX
biomvRCNS.c: In function 'logviterbi':
biomvRCNS.c:401:36: error: 'DOUBLE_XMAX' undeclared (first use in this function); did you mean 'DBL_MAX'?
  401 |         double obs, prod, maxprod=-DOUBLE_XMAX;
      |                                    ^~~~~~~~~~~
      |                                    DBL_MAX
make: *** [F:/biocbuild/bbs-3.17-bioc/R/etc/x64/Makeconf:265: biomvRCNS.o] Error 1
ERROR: compilation failed for package 'biomvRCNS'
* removing 'F:/biocbuild/bbs-3.17-bioc/tmpdir/RtmpWItyky/Rinst38583eba7376/biomvRCNS'
      -----------------------------------
ERROR: package installation failed