Ernest Turro
| Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/bgx |
| git_branch: RELEASE_3_17 |
| git_last_commit: 21cf621 |
| git_last_commit_date: 2023-04-25 09:45:24 -0400 (Tue, 25 Apr 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-10-16 11:35:56 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 158/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| bgx 1.66.0 (landing page) Ernest Turro
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the bgx package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bgx.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: bgx |
| Version: 1.66.0 |
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:bgx.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings bgx_1.66.0.tar.gz |
| StartedAt: 2023-10-15 23:48:06 -0400 (Sun, 15 Oct 2023) |
| EndedAt: 2023-10-15 23:51:08 -0400 (Sun, 15 Oct 2023) |
| EllapsedTime: 181.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: bgx.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:bgx.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings bgx_1.66.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.17-bioc/meat/bgx.Rcheck'
* using R version 4.3.1 (2023-06-16 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 12.2.0
GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'bgx/DESCRIPTION' ... OK
* this is package 'bgx' version '1.66.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'bgx' can be installed ... OK
* used C compiler: 'gcc.exe (GCC) 12.2.0'
* used C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'Rcpp'
All declared Imports should be used.
Packages in Depends field not imported from:
'Biobase' 'affy'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bgx: no visible global function definition for 'geneNames'
bgx: no visible global function definition for 'sampleNames'
bgx: no visible global function definition for 'new'
bgx: no visible global function definition for 'annotation'
bgx: no visible global function definition for 'description'
bgx: no visible global function definition for
'assayDataElementReplace'
loessNorm: no visible global function definition for 'loess'
loessNorm: no visible global function definition for 'predict'
plotDEDensity: no visible global function definition for 'density'
plotDEDensity: no visible global function definition for 'abline'
plotDEHistogram: no visible global function definition for 'hist'
plotDEHistogram: no visible global function definition for 'glm'
plotDEHistogram: no visible binding for global variable 'poisson'
plotDEHistogram: no visible global function definition for 'lines'
plotDEHistogram: no visible global function definition for 'points'
plotDiffRank: no visible global function definition for 'quantile'
plotDiffRank: no visible global function definition for 'sd'
plotDiffRank: no visible global function definition for 'segments'
plotDiffRank: no visible global function definition for 'abline'
plotExpressionDensity: no visible global function definition for
'density'
plotExpressionDensity: no visible global function definition for
'lines'
plotExpressionDensity: no visible global function definition for
'legend'
readSingle.bgx: no visible global function definition for 'read.delim'
saveAffinityPlot.bgx: no visible global function definition for 'pdf'
saveAffinityPlot.bgx: no visible global function definition for 'par'
saveAffinityPlot.bgx: no visible global function definition for
'dev.off'
setupVars.bgx : calcProbeAffCategories: no visible global function
definition for 'cdfName'
setupVars.bgx : calcProbeAffCategories: no visible global function
definition for 'median'
setupVars.bgx: no visible global function definition for 'pData'
setupVars.bgx: no visible global function definition for 'indexProbes'
standalone.bgx: no visible global function definition for 'write.table'
standalone.bgx: no visible global function definition for 'geneNames'
standalone.bgx: no visible global function definition for 'sampleNames'
Undefined global functions or variables:
abline annotation assayDataElementReplace cdfName density description
dev.off geneNames glm hist indexProbes legend lines loess median new
pData par pdf points poisson predict quantile read.delim sampleNames
sd segments write.table
Consider adding
importFrom("grDevices", "dev.off", "pdf")
importFrom("graphics", "abline", "hist", "legend", "lines", "par",
"points", "segments")
importFrom("methods", "new")
importFrom("stats", "density", "glm", "loess", "median", "poisson",
"predict", "quantile", "sd")
importFrom("utils", "read.delim", "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... NOTE
prepare_Rd: analysis.bgx.Rd:48-49: Dropping empty section \examples
checkRd: (-1) bgx.Rd:9: Escaped LaTeX specials: \_ \_
prepare_Rd: mcmc.bgx.Rd:48-49: Dropping empty section \examples
prepare_Rd: readOutput.bgx.Rd:23-24: Dropping empty section \examples
prepare_Rd: saveAffinityPlot.bgx.Rd:18-19: Dropping empty section \details
prepare_Rd: saveAffinityPlot.bgx.Rd:20-21: Dropping empty section \value
prepare_Rd: saveAffinityPlot.bgx.Rd:26-27: Dropping empty section \examples
prepare_Rd: setupVars.bgx.Rd:21-22: Dropping empty section \details
prepare_Rd: setupVars.bgx.Rd:43-44: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.17-bioc/R/library/bgx/libs/x64/bgx.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
bgx 61.58 16.44 78.3
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 6 NOTEs
See
'F:/biocbuild/bbs-3.17-bioc/meat/bgx.Rcheck/00check.log'
for details.
bgx.Rcheck/00install.out
##############################################################################
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###
### Running command:
###
### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL bgx
###
##############################################################################
##############################################################################
* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'bgx' ...
** using staged installation
Untarring Boost header files...
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture
using C compiler: 'gcc.exe (GCC) 12.2.0'
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bgx.cc -o bgx.o
In file included from ../boostIncl/boost/config.hpp:57,
from ../boostIncl/boost/random/linear_congruential.hpp:22,
from ../boostIncl/boost/random.hpp:36,
from rand.hh:32,
from bgx.cc:32:
../boostIncl/boost/random/detail/const_mod.hpp: In static member function 'static IntType boost::random::const_mod<IntType, m>::invert_euclidian(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_148' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/detail/const_mod.hpp:148:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
148 | BOOST_STATIC_ASSERT(m > 0);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_152' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/detail/const_mod.hpp:152:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
152 | BOOST_STATIC_ASSERT(boost::integer_traits<IntType>::is_signed);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/linear_congruential.hpp: In constructor 'boost::random::linear_congruential<IntType, a, c, m, val>::linear_congruential(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_63' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/linear_congruential.hpp:63:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
63 | BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/inversive_congruential.hpp: In constructor 'boost::random::inversive_congruential<IntType, a, b, p, val>::inversive_congruential(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_50' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/inversive_congruential.hpp:50:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
50 | BOOST_STATIC_ASSERT(b >= 0);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_51' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/inversive_congruential.hpp:51:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
51 | BOOST_STATIC_ASSERT(p > 1);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_52' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/inversive_congruential.hpp:52:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
52 | BOOST_STATIC_ASSERT(a >= 1);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/shuffle_output.hpp: In member function 'void boost::random::shuffle_output<UniformRandomNumberGenerator, k, val>::init()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_124' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/shuffle_output.hpp:124:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
124 | BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/mersenne_twister.hpp: In member function 'void boost::random::mersenne_twister<UIntType, w, n, m, r, a, u, s, b, t, c, l, val>::seed(Generator&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_99' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/mersenne_twister.hpp:99:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
99 | BOOST_STATIC_ASSERT(!std::numeric_limits<result_type>::is_signed);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/subtract_with_carry.hpp: In constructor 'boost::random::subtract_with_carry<IntType, m, s, r, val>::subtract_with_carry()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_83' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/subtract_with_carry.hpp:83:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
83 | BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_signed);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_84' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/subtract_with_carry.hpp:84:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
84 | BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor 'boost::random::linear_feedback_shift<UIntType, w, k, q, s, val>::linear_feedback_shift(UIntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_55' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp:55:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
55 | BOOST_STATIC_ASSERT(std::numeric_limits<UIntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_56' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp:56:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
56 | BOOST_STATIC_ASSERT(!std::numeric_limits<UIntType>::is_signed);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor 'boost::random::linear_feedback_shift<UIntType, w, k, q, s, val>::linear_feedback_shift(It&, It)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_69' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp:69:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
69 | BOOST_STATIC_ASSERT(std::numeric_limits<UIntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_70' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp:70:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
70 | BOOST_STATIC_ASSERT(!std::numeric_limits<UIntType>::is_signed);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/xor_combine.hpp: In member function 'boost::random::xor_combine<URNG1, s1, URNG2, s2, val>::result_type boost::random::xor_combine<URNG1, s1, URNG2, s2, val>::operator()()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_67' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/xor_combine.hpp:67:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
67 | BOOST_STATIC_ASSERT(std::numeric_limits<typename base1_type::result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_68' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/xor_combine.hpp:68:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
68 | BOOST_STATIC_ASSERT(std::numeric_limits<typename base2_type::result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_69' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/xor_combine.hpp:69:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
69 | BOOST_STATIC_ASSERT(std::numeric_limits<typename base1_type::result_type>::digits >= std::numeric_limits<typename base2_type::result_type>::digits);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/uniform_smallint.hpp: In constructor 'boost::detail::uniform_smallint_float<UniformRandomNumberGenerator, IntType>::uniform_smallint_float(base_type&, IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_121' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/uniform_smallint.hpp:121:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
121 | BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_122' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/uniform_smallint.hpp:122:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
122 | BOOST_STATIC_ASSERT(!std::numeric_limits<typename base_type::result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/uniform_smallint.hpp: In constructor 'boost::uniform_smallint<IntType>::uniform_smallint(IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_170' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/uniform_smallint.hpp:170:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
170 | BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/uniform_int.hpp: In constructor 'boost::uniform_int<IntType>::uniform_int(IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_47' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/uniform_int.hpp:47:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
47 | BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/random_number_generator.hpp: In constructor 'boost::random_number_generator<UniformRandomNumberGenerator, IntType>::random_number_generator(base_type&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_38' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/random_number_generator.hpp:38:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
38 | BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/uniform_real.hpp: In constructor 'boost::uniform_real<RealType>::uniform_real(RealType, RealType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_41' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/uniform_real.hpp:41:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
41 | BOOST_STATIC_ASSERT(!std::numeric_limits<RealType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/poisson_distribution.hpp: In constructor 'boost::poisson_distribution<IntType, RealType>::poisson_distribution(const RealType&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_38' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/poisson_distribution.hpp:38:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
38 | BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_39' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/poisson_distribution.hpp:39:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
39 | BOOST_STATIC_ASSERT(!std::numeric_limits<RealType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
rand.hh: In member function 'RealType Rand<GenType, RealType>::Normal()':
rand.hh:399:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
399 | if(u0<.5) return y; return -y;
| ^~
rand.hh:399:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
399 | if(u0<.5) return y; return -y;
| ^~~~~~
rand.hh:406:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
406 | if(u0<.5) return y; return -y;
| ^~
rand.hh:406:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
406 | if(u0<.5) return y; return -y;
| ^~~~~~
rand.hh:413:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
413 | if(u0<.5) return y; return -y;
| ^~
rand.hh:413:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
413 | if(u0<.5) return y; return -y;
| ^~~~~~
rand.hh:420:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
420 | if(u0<.5) return y; return -y;
| ^~
rand.hh:420:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
420 | if(u0<.5) return y; return -y;
| ^~~~~~
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bgx_frontend.cc -o bgx_frontend.o
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -DUSING_R -ffast-math -O3 -std=c99 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c qnorm.c -o qnorm.o
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rundir.cc -o rundir.o
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sokal.cc -o sokal.o
g++ -std=gnu++17 -shared -s -static-libgcc -o bgx.dll tmp.def bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-bgx/00new/bgx/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bgx)
bgx.Rcheck/bgx-Ex.timings
| name | user | system | elapsed | |
| bgx | 61.58 | 16.44 | 78.30 | |