| Back to Multiple platform build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-10-16 11:37:38 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2133/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Travel 1.8.0 (landing page) Jiefei Wang
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the Travel package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Travel.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Travel |
| Version: 1.8.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Travel |
| StartedAt: 2023-10-15 21:58:02 -0400 (Sun, 15 Oct 2023) |
| EndedAt: 2023-10-15 21:59:59 -0400 (Sun, 15 Oct 2023) |
| EllapsedTime: 117.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Travel
###
##############################################################################
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* checking for file ‘Travel/DESCRIPTION’ ... OK
* preparing ‘Travel’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘Travel’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++11
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `pkg-config fuse --cflags` -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Cpp_interface.cpp -o Cpp_interface.o
Package fuse was not found in the pkg-config search path.
Perhaps you should add the directory containing `fuse.pc'
to the PKG_CONFIG_PATH environment variable
No package 'fuse' found
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `pkg-config fuse --cflags` -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
Package fuse was not found in the pkg-config search path.
Perhaps you should add the directory containing `fuse.pc'
to the PKG_CONFIG_PATH environment variable
No package 'fuse' found
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `pkg-config fuse --cflags` -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c altfile_operations.cpp -o altfile_operations.o
Package fuse was not found in the pkg-config search path.
Perhaps you should add the directory containing `fuse.pc'
to the PKG_CONFIG_PATH environment variable
No package 'fuse' found
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `pkg-config fuse --cflags` -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c altmmap_operations.cpp -o altmmap_operations.o
Package fuse was not found in the pkg-config search path.
Perhaps you should add the directory containing `fuse.pc'
to the PKG_CONFIG_PATH environment variable
No package 'fuse' found
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `pkg-config fuse --cflags` -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c altrep_manager.cpp -o altrep_manager.o
Package fuse was not found in the pkg-config search path.
Perhaps you should add the directory containing `fuse.pc'
to the PKG_CONFIG_PATH environment variable
No package 'fuse' found
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `pkg-config fuse --cflags` -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c class_Cache_block.cpp -o class_Cache_block.o
Package fuse was not found in the pkg-config search path.
Perhaps you should add the directory containing `fuse.pc'
to the PKG_CONFIG_PATH environment variable
No package 'fuse' found
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `pkg-config fuse --cflags` -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c class_Filesystem_cache_copier.cpp -o class_Filesystem_cache_copier.o
Package fuse was not found in the pkg-config search path.
Perhaps you should add the directory containing `fuse.pc'
to the PKG_CONFIG_PATH environment variable
No package 'fuse' found
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `pkg-config fuse --cflags` -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c class_Filesystem_file_data.cpp -o class_Filesystem_file_data.o
Package fuse was not found in the pkg-config search path.
Perhaps you should add the directory containing `fuse.pc'
to the PKG_CONFIG_PATH environment variable
No package 'fuse' found
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `pkg-config fuse --cflags` -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c class_Memory_mapped.cpp -o class_Memory_mapped.o
Package fuse was not found in the pkg-config search path.
Perhaps you should add the directory containing `fuse.pc'
to the PKG_CONFIG_PATH environment variable
No package 'fuse' found
In file included from class_Memory_mapped.cpp:19:
./class_Memory_mapped.h:19:16: warning: private field 'hint' is not used [-Wunused-private-field]
Cache_hint hint = Normal;
^
./class_Memory_mapped.h:21:11: warning: private field 'file_handle' is not used [-Wunused-private-field]
void *file_handle = nullptr;
^
./class_Memory_mapped.h:22:11: warning: private field 'map_handle' is not used [-Wunused-private-field]
void *map_handle = nullptr;
^
3 warnings generated.
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `pkg-config fuse --cflags` -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c class_Protect_guard.cpp -o class_Protect_guard.o
Package fuse was not found in the pkg-config search path.
Perhaps you should add the directory containing `fuse.pc'
to the PKG_CONFIG_PATH environment variable
No package 'fuse' found
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `pkg-config fuse --cflags` -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c class_Subset_index.cpp -o class_Subset_index.o
Package fuse was not found in the pkg-config search path.
Perhaps you should add the directory containing `fuse.pc'
to the PKG_CONFIG_PATH environment variable
No package 'fuse' found
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `pkg-config fuse --cflags` -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c class_Timer.cpp -o class_Timer.o
Package fuse was not found in the pkg-config search path.
Perhaps you should add the directory containing `fuse.pc'
to the PKG_CONFIG_PATH environment variable
No package 'fuse' found
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `pkg-config fuse --cflags` -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c class_Unique_buffer.cpp -o class_Unique_buffer.o
Package fuse was not found in the pkg-config search path.
Perhaps you should add the directory containing `fuse.pc'
to the PKG_CONFIG_PATH environment variable
No package 'fuse' found
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `pkg-config fuse --cflags` -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c examples.cpp -o examples.o
Package fuse was not found in the pkg-config search path.
Perhaps you should add the directory containing `fuse.pc'
to the PKG_CONFIG_PATH environment variable
No package 'fuse' found
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `pkg-config fuse --cflags` -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c filesystem_manager.cpp -o filesystem_manager.o
Package fuse was not found in the pkg-config search path.
Perhaps you should add the directory containing `fuse.pc'
to the PKG_CONFIG_PATH environment variable
No package 'fuse' found
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `pkg-config fuse --cflags` -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c filesystem_operations_dokan.cpp -o filesystem_operations_dokan.o
Package fuse was not found in the pkg-config search path.
Perhaps you should add the directory containing `fuse.pc'
to the PKG_CONFIG_PATH environment variable
No package 'fuse' found
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `pkg-config fuse --cflags` -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c filesystem_operations_fuse.cpp -o filesystem_operations_fuse.o
Package fuse was not found in the pkg-config search path.
Perhaps you should add the directory containing `fuse.pc'
to the PKG_CONFIG_PATH environment variable
No package 'fuse' found
filesystem_operations_fuse.cpp:4:10: fatal error: 'fuse_lowlevel.h' file not found
#include <fuse_lowlevel.h>
^~~~~~~~~~~~~~~~~
1 error generated.
make: *** [filesystem_operations_fuse.o] Error 1
ERROR: compilation failed for package ‘Travel’
* removing ‘/private/tmp/Rtmp0B0Zxd/Rinst14cec50b4103b/Travel’
-----------------------------------
ERROR: package installation failed