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This page was generated on 2023-10-16 11:36:40 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1965/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SparseArray 1.0.12  (landing page)
Hervé Pagès
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/SparseArray
git_branch: RELEASE_3_17
git_last_commit: 90e0d62
git_last_commit_date: 2023-08-30 15:02:57 -0400 (Wed, 30 Aug 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.6.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

INSTALL results for SparseArray on palomino3


To the developers/maintainers of the SparseArray package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SparseArray.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SparseArray
Version: 1.0.12
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL SparseArray
StartedAt: 2023-10-15 15:54:25 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 15:55:15 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 50.3 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL SparseArray
###
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'SparseArray' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ExtendableJaggedArray.c -o ExtendableJaggedArray.o
ExtendableJaggedArray.c: In function '_move_ExtendableJaggedArrays_to_SVT':
ExtendableJaggedArray.c:142:25: warning: 'vals' may be used uninitialized [-Wmaybe-uninitialized]
  142 |                         free(vals);
      |                         ^~~~~~~~~~
ExtendableJaggedArray.c:120:21: note: 'vals' was declared here
  120 |         int *offs, *vals;
      |                     ^~~~
ExtendableJaggedArray.c:138:25: warning: 'offs' may be used uninitialized [-Wmaybe-uninitialized]
  138 |                         free(offs);
      |                         ^~~~~~~~~~
ExtendableJaggedArray.c:120:14: note: 'offs' was declared here
  120 |         int *offs, *vals;
      |              ^~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c IRanges_stubs.c -o IRanges_stubs.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c R_init_SparseArray.c -o R_init_SparseArray.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rvector_summarization.c -o Rvector_summarization.o
Rvector_summarization.c:1274:12: warning: 'count_NA_list_elts' defined but not used [-Wunused-function]
 1274 | static int count_NA_list_elts(SEXP x)
      |            ^~~~~~~~~~~~~~~~~~
Rvector_summarization.c:1262:12: warning: 'any_NA_list_elt' defined but not used [-Wunused-function]
 1262 | static int any_NA_list_elt(SEXP x)
      |            ^~~~~~~~~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rvector_utils.c -o Rvector_utils.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SBT_utils.c -o SBT_utils.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SVT_SparseArray_class.c -o SVT_SparseArray_class.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SparseArray_Complex_methods.c -o SparseArray_Complex_methods.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SparseArray_Math_methods.c -o SparseArray_Math_methods.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SparseArray_Ops_methods.c -o SparseArray_Ops_methods.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SparseArray_abind.c -o SparseArray_abind.o
In function 'concatenate_leaf_vectors',
    inlined from 'REC_abind_SVTs' at SparseArray_abind.c:195:10:
SparseArray_abind.c:157:25: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
  157 |                         copy_Rvector_elts_FUN(lv_vals, 0, ans_vals, k1, lv_len);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SparseArray_abind.c: In function 'REC_abind_SVTs':
SparseArray_abind.c:136:53: note: 'lv_vals' was declared here
  136 |         SEXP SVT, ans, ans_offs, ans_vals, lv_offs, lv_vals;
      |                                                     ^~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SparseArray_aperm.c -o SparseArray_aperm.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SparseArray_class.c -o SparseArray_class.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SparseArray_dim_tuning.c -o SparseArray_dim_tuning.o
SparseArray_dim_tuning.c: In function 'REC_tune_SVT':
SparseArray_dim_tuning.c:260:47: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  260 |         if (SVT == R_NilValue || nops == ndim && cumallKEEP[ndim - 1])
      |                                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SparseArray_subassignment.c -o SparseArray_subassignment.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SparseArray_subsetting.c -o SparseArray_subsetting.o
In function 'subset_leaf_vector',
    inlined from 'REC_subset_SVT' at SparseArray_subsetting.c:181:10:
SparseArray_subsetting.c:139:42: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized]
  139 |         build_lookup_table(lookup_table, INTEGER(lv_offs), lv_len);
      |                                          ^~~~~~~~~~~~~~~~
SparseArray_subsetting.c: In function 'REC_subset_SVT':
SparseArray_subsetting.c:129:14: note: 'lv_offs' was declared here
  129 |         SEXP lv_offs, lv_vals, ans_offs, ans_vals, ans;
      |              ^~~~~~~
SparseArray_subsetting.c:157:40: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
  157 |         ans_vals = PROTECT(allocVector(TYPEOF(lv_vals), ans_len));
      |                                        ^~~~~~
SparseArray_subsetting.c:129:23: note: 'lv_vals' was declared here
  129 |         SEXP lv_offs, lv_vals, ans_offs, ans_vals, ans;
      |                       ^~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SparseArray_summarization.c -o SparseArray_summarization.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SparseMatrix_mult.c -o SparseMatrix_mult.o
SparseMatrix_mult.c:392:13: warning: 'crossprod2_mat_lv_double' defined but not used [-Wunused-function]
  392 | static void crossprod2_mat_lv_double(const double *mat1, SEXP lv2,
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
SparseMatrix_mult.c:354:13: warning: 'crossprod2_lv_mat_double' defined but not used [-Wunused-function]
  354 | static void crossprod2_lv_mat_double(SEXP lv1, const double *mat2,
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
SparseMatrix_mult.c: In function 'expand_double_lv':
SparseMatrix_mult.c:85:34: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
   85 |         _copy_doubles_to_offsets(REAL(lv_vals), INTEGER(lv_offs), lv_len, x);
      |                                  ^~~~~~~~~~~~~
SparseMatrix_mult.c:81:23: note: 'lv_vals' was declared here
   81 |         SEXP lv_offs, lv_vals;
      |                       ^~~~~~~
SparseMatrix_mult.c:85:49: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized]
   85 |         _copy_doubles_to_offsets(REAL(lv_vals), INTEGER(lv_offs), lv_len, x);
      |                                                 ^~~~~~~~~~~~~~~~
SparseMatrix_mult.c:81:14: note: 'lv_offs' was declared here
   81 |         SEXP lv_offs, lv_vals;
      |              ^~~~~~~
SparseMatrix_mult.c: In function 'lv_has_no_NA':
SparseMatrix_mult.c:44:26: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
   44 |         return has_no_NA(INTEGER(lv_vals), lv_len);
      |                          ^~~~~~~~~~~~~~~~
SparseMatrix_mult.c:41:23: note: 'lv_vals' was declared here
   41 |         SEXP lv_offs, lv_vals;
      |                       ^~~~~~~
SparseMatrix_mult.c: In function 'lv_has_no_NaN_or_Inf':
SparseMatrix_mult.c:35:34: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
   35 |         return has_no_NaN_or_Inf(REAL(lv_vals), lv_len);
      |                                  ^~~~~~~~~~~~~
SparseMatrix_mult.c:32:23: note: 'lv_vals' was declared here
   32 |         SEXP lv_offs, lv_vals;
      |                       ^~~~~~~
SparseMatrix_mult.c: In function 'expand_int_lv':
SparseMatrix_mult.c:96:31: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
   96 |         _copy_ints_to_offsets(INTEGER(lv_vals), INTEGER(lv_offs), lv_len, x);
      |                               ^~~~~~~~~~~~~~~~
SparseMatrix_mult.c:92:23: note: 'lv_vals' was declared here
   92 |         SEXP lv_offs, lv_vals;
      |                       ^~~~~~~
SparseMatrix_mult.c:96:49: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized]
   96 |         _copy_ints_to_offsets(INTEGER(lv_vals), INTEGER(lv_offs), lv_len, x);
      |                                                 ^~~~~~~~~~~~~~~~
SparseMatrix_mult.c:92:14: note: 'lv_offs' was declared here
   92 |         SEXP lv_offs, lv_vals;
      |              ^~~~~~~
In function 'lv_has_no_NA',
    inlined from 'crossprod2_Rpp_int' at SparseMatrix_mult.c:801:14,
    inlined from 'C_crossprod2_SVT_SVT' at SparseMatrix_mult.c:1105:4:
SparseMatrix_mult.c:44:26: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
   44 |         return has_no_NA(INTEGER(lv_vals), lv_len);
      |                          ^~~~~~~~~~~~~~~~
SparseMatrix_mult.c: In function 'C_crossprod2_SVT_SVT':
SparseMatrix_mult.c:41:23: note: 'lv_vals' was declared here
   41 |         SEXP lv_offs, lv_vals;
      |                       ^~~~~~~
In function 'lv_has_no_NA',
    inlined from 'crossprod2_Lpp_int' at SparseMatrix_mult.c:833:14,
    inlined from 'C_crossprod2_SVT_SVT' at SparseMatrix_mult.c:1114:4:
SparseMatrix_mult.c:44:26: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
   44 |         return has_no_NA(INTEGER(lv_vals), lv_len);
      |                          ^~~~~~~~~~~~~~~~
SparseMatrix_mult.c: In function 'C_crossprod2_SVT_SVT':
SparseMatrix_mult.c:41:23: note: 'lv_vals' was declared here
   41 |         SEXP lv_offs, lv_vals;
      |                       ^~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c XVector_stubs.c -o XVector_stubs.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c coerceVector2.c -o coerceVector2.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c leaf_vector_Arith.c -o leaf_vector_Arith.o
leaf_vector_Arith.c: In function 'Rpow_double':
leaf_vector_Arith.c:164:19: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  164 |         if (x < 0 && y == R_PosInf || x == R_NegInf && y != trunc(y))
      |             ~~~~~~^~~~~~~~~~~~~~~~
leaf_vector_Arith.c: In function 'mult0_leaf_vector':
leaf_vector_Arith.c:436:13: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
  436 |         if (TYPEOF(lv_vals) == INTSXP) {
      |             ^~~~~~~~~~~~~~~
leaf_vector_Arith.c:430:23: note: 'lv_vals' was declared here
  430 |         SEXP lv_offs, lv_vals;
      |                       ^~~~~~~
leaf_vector_Arith.c:434:21: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized]
  434 |         lv_offs_p = INTEGER(lv_offs);
      |                     ^~~~~~~~~~~~~~~~
leaf_vector_Arith.c:430:14: note: 'lv_offs' was declared here
  430 |         SEXP lv_offs, lv_vals;
      |              ^~~~~~~
leaf_vector_Arith.c: In function '_unary_minus_leaf_vector':
leaf_vector_Arith.c:67:43: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
   67 |                         int *ans_vals_p = INTEGER(ans_vals);
      |                                           ^~~~~~~~~~~~~~~~~
leaf_vector_Arith.c:54:23: note: 'lv_vals' was declared here
   54 |         SEXP lv_offs, lv_vals, ans_vals, ans;
      |                       ^~~~~~~
leaf_vector_Arith.c:109:15: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized]
  109 |         ans = _new_leaf_vector(lv_offs, ans_vals);
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
leaf_vector_Arith.c:54:14: note: 'lv_offs' was declared here
   54 |         SEXP lv_offs, lv_vals, ans_vals, ans;
      |              ^~~~~~~
leaf_vector_Arith.c: In function '_Arith_lv1_v2':
leaf_vector_Arith.c:384:13: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized]
  384 |         if (TYPEOF(lv1_vals) == INTSXP) {
      |             ^~~~~~~~~~~~~~~~
leaf_vector_Arith.c:376:24: note: 'lv1_vals' was declared here
  376 |         SEXP lv1_offs, lv1_vals;
      |                        ^~~~~~~~
leaf_vector_Arith.c:381:19: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized]
  381 |         offs1_p = INTEGER(lv1_offs);
      |                   ^~~~~~~~~~~~~~~~~
leaf_vector_Arith.c:376:14: note: 'lv1_offs' was declared here
  376 |         SEXP lv1_offs, lv1_vals;
      |              ^~~~~~~~
leaf_vector_Arith.c: In function '_Arith_lv1_lv2':
leaf_vector_Arith.c:520:21: warning: 'lv2_vals' may be used uninitialized [-Wmaybe-uninitialized]
  520 |                 if (TYPEOF(lv2_vals) == INTSXP) {
      |                     ^~~~~~~~~~~~~~~~
leaf_vector_Arith.c:487:44: note: 'lv2_vals' was declared here
  487 |         SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals;
      |                                            ^~~~~~~~
leaf_vector_Arith.c:516:19: warning: 'lv2_offs' may be used uninitialized [-Wmaybe-uninitialized]
  516 |         offs2_p = INTEGER(lv2_offs);
      |                   ^~~~~~~~~~~~~~~~~
leaf_vector_Arith.c:487:34: note: 'lv2_offs' was declared here
  487 |         SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals;
      |                                  ^~~~~~~~
leaf_vector_Arith.c:519:13: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized]
  519 |         if (TYPEOF(lv1_vals) == INTSXP) {
      |             ^~~~~~~~~~~~~~~~
leaf_vector_Arith.c:487:24: note: 'lv1_vals' was declared here
  487 |         SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals;
      |                        ^~~~~~~~
leaf_vector_Arith.c:515:19: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized]
  515 |         offs1_p = INTEGER(lv1_offs);
      |                   ^~~~~~~~~~~~~~~~~
leaf_vector_Arith.c:487:14: note: 'lv1_offs' was declared here
  487 |         SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals;
      |              ^~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c leaf_vector_Compare.c -o leaf_vector_Compare.o
leaf_vector_Compare.c: In function 'Compare_lv1_zero':
leaf_vector_Compare.c:645:40: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized]
  645 |                                 offs1, COMPLEX(lv1_vals), lv1_len, Rcomplex0,
      |                                        ^~~~~~~~~~~~~~~~~
leaf_vector_Compare.c:622:24: note: 'lv1_vals' was declared here
  622 |         SEXP lv1_offs, lv1_vals;
      |                        ^~~~~~~~
leaf_vector_Compare.c:626:17: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized]
  626 |         offs1 = INTEGER(lv1_offs);
      |                 ^~~~~~~~~~~~~~~~~
leaf_vector_Compare.c:622:14: note: 'lv1_offs' was declared here
  622 |         SEXP lv1_offs, lv1_vals;
      |              ^~~~~~~~
leaf_vector_Compare.c: In function '_Compare_lv1_v2':
leaf_vector_Compare.c:669:17: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized]
  669 |         switch (TYPEOF(lv1_vals)) {
      |                 ^~~~~~~~~~~~~~~~
leaf_vector_Compare.c:664:24: note: 'lv1_vals' was declared here
  664 |         SEXP lv1_offs, lv1_vals;
      |                        ^~~~~~~~
leaf_vector_Compare.c:668:17: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized]
  668 |         offs1 = INTEGER(lv1_offs);
      |                 ^~~~~~~~~~~~~~~~~
leaf_vector_Compare.c:664:14: note: 'lv1_offs' was declared here
  664 |         SEXP lv1_offs, lv1_vals;
      |              ^~~~~~~~
In function 'sparse_Compare_Rcomplexes_lv2',
    inlined from '_Compare_lv1_lv2' at leaf_vector_Compare.c:738:13:
leaf_vector_Compare.c:582:18: warning: 'lv2_vals' may be used uninitialized [-Wmaybe-uninitialized]
  582 |         Rtype2 = TYPEOF(lv2_vals);
      |                  ^~~~~~~~~~~~~~~~
leaf_vector_Compare.c: In function '_Compare_lv1_lv2':
leaf_vector_Compare.c:576:24: note: 'lv2_vals' was declared here
  576 |         SEXP lv2_offs, lv2_vals;
      |                        ^~~~~~~~
In function 'sparse_Compare_Rcomplexes_lv2',
    inlined from '_Compare_lv1_lv2' at leaf_vector_Compare.c:738:13:
leaf_vector_Compare.c:581:17: warning: 'lv2_offs' may be used uninitialized [-Wmaybe-uninitialized]
  581 |         offs2 = INTEGER(lv2_offs);
      |                 ^~~~~~~~~~~~~~~~~
leaf_vector_Compare.c: In function '_Compare_lv1_lv2':
leaf_vector_Compare.c:576:14: note: 'lv2_offs' was declared here
  576 |         SEXP lv2_offs, lv2_vals;
      |              ^~~~~~~~
In function 'sparse_Compare_doubles_lv2',
    inlined from '_Compare_lv1_lv2' at leaf_vector_Compare.c:733:13:
leaf_vector_Compare.c:542:18: warning: 'lv2_vals' may be used uninitialized [-Wmaybe-uninitialized]
  542 |         Rtype2 = TYPEOF(lv2_vals);
      |                  ^~~~~~~~~~~~~~~~
leaf_vector_Compare.c: In function '_Compare_lv1_lv2':
leaf_vector_Compare.c:536:24: note: 'lv2_vals' was declared here
  536 |         SEXP lv2_offs, lv2_vals;
      |                        ^~~~~~~~
In function 'sparse_Compare_doubles_lv2',
    inlined from '_Compare_lv1_lv2' at leaf_vector_Compare.c:733:13:
leaf_vector_Compare.c:541:17: warning: 'lv2_offs' may be used uninitialized [-Wmaybe-uninitialized]
  541 |         offs2 = INTEGER(lv2_offs);
      |                 ^~~~~~~~~~~~~~~~~
leaf_vector_Compare.c: In function '_Compare_lv1_lv2':
leaf_vector_Compare.c:536:14: note: 'lv2_offs' was declared here
  536 |         SEXP lv2_offs, lv2_vals;
      |              ^~~~~~~~
In function 'sparse_Compare_ints_lv2',
    inlined from '_Compare_lv1_lv2' at leaf_vector_Compare.c:728:13:
leaf_vector_Compare.c:502:18: warning: 'lv2_vals' may be used uninitialized [-Wmaybe-uninitialized]
  502 |         Rtype2 = TYPEOF(lv2_vals);
      |                  ^~~~~~~~~~~~~~~~
leaf_vector_Compare.c: In function '_Compare_lv1_lv2':
leaf_vector_Compare.c:496:24: note: 'lv2_vals' was declared here
  496 |         SEXP lv2_offs, lv2_vals;
      |                        ^~~~~~~~
In function 'sparse_Compare_ints_lv2',
    inlined from '_Compare_lv1_lv2' at leaf_vector_Compare.c:728:13:
leaf_vector_Compare.c:501:17: warning: 'lv2_offs' may be used uninitialized [-Wmaybe-uninitialized]
  501 |         offs2 = INTEGER(lv2_offs);
      |                 ^~~~~~~~~~~~~~~~~
leaf_vector_Compare.c: In function '_Compare_lv1_lv2':
leaf_vector_Compare.c:496:14: note: 'lv2_offs' was declared here
  496 |         SEXP lv2_offs, lv2_vals;
      |              ^~~~~~~~
In function 'sparse_Compare_Rbytes_lv2',
    inlined from '_Compare_lv1_lv2' at leaf_vector_Compare.c:723:13:
leaf_vector_Compare.c:462:18: warning: 'lv2_vals' may be used uninitialized [-Wmaybe-uninitialized]
  462 |         Rtype2 = TYPEOF(lv2_vals);
      |                  ^~~~~~~~~~~~~~~~
leaf_vector_Compare.c: In function '_Compare_lv1_lv2':
leaf_vector_Compare.c:456:24: note: 'lv2_vals' was declared here
  456 |         SEXP lv2_offs, lv2_vals;
      |                        ^~~~~~~~
In function 'sparse_Compare_Rbytes_lv2',
    inlined from '_Compare_lv1_lv2' at leaf_vector_Compare.c:723:13:
leaf_vector_Compare.c:461:17: warning: 'lv2_offs' may be used uninitialized [-Wmaybe-uninitialized]
  461 |         offs2 = INTEGER(lv2_offs);
      |                 ^~~~~~~~~~~~~~~~~
leaf_vector_Compare.c: In function '_Compare_lv1_lv2':
leaf_vector_Compare.c:456:14: note: 'lv2_offs' was declared here
  456 |         SEXP lv2_offs, lv2_vals;
      |              ^~~~~~~~
leaf_vector_Compare.c:720:18: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized]
  720 |         Rtype1 = TYPEOF(lv1_vals);
      |                  ^~~~~~~~~~~~~~~~
leaf_vector_Compare.c:705:24: note: 'lv1_vals' was declared here
  705 |         SEXP lv1_offs, lv1_vals;
      |                        ^~~~~~~~
leaf_vector_Compare.c:719:17: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized]
  719 |         offs1 = INTEGER(lv1_offs);
      |                 ^~~~~~~~~~~~~~~~~
leaf_vector_Compare.c:705:14: note: 'lv1_offs' was declared here
  705 |         SEXP lv1_offs, lv1_vals;
      |              ^~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c leaf_vector_Logic.c -o leaf_vector_Logic.o
leaf_vector_Logic.c: In function '_Logic_lv1_lv2':
leaf_vector_Logic.c:88:44: warning: 'lv2_vals' may be used uninitialized [-Wmaybe-uninitialized]
   88 |                         INTEGER(lv2_offs), INTEGER(lv2_vals), lv2_len,
      |                                            ^~~~~~~~~~~~~~~~~
leaf_vector_Logic.c:77:44: note: 'lv2_vals' was declared here
   77 |         SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals;
      |                                            ^~~~~~~~
leaf_vector_Logic.c:88:25: warning: 'lv2_offs' may be used uninitialized [-Wmaybe-uninitialized]
   88 |                         INTEGER(lv2_offs), INTEGER(lv2_vals), lv2_len,
      |                         ^~~~~~~~~~~~~~~~~
leaf_vector_Logic.c:77:34: note: 'lv2_offs' was declared here
   77 |         SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals;
      |                                  ^~~~~~~~
leaf_vector_Logic.c:87:44: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized]
   87 |                         INTEGER(lv1_offs), INTEGER(lv1_vals), lv1_len,
      |                                            ^~~~~~~~~~~~~~~~~
leaf_vector_Logic.c:77:24: note: 'lv1_vals' was declared here
   77 |         SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals;
      |                        ^~~~~~~~
leaf_vector_Logic.c:87:25: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized]
   87 |                         INTEGER(lv1_offs), INTEGER(lv1_vals), lv1_len,
      |                         ^~~~~~~~~~~~~~~~~
leaf_vector_Logic.c:77:14: note: 'lv1_offs' was declared here
   77 |         SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals;
      |              ^~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c leaf_vector_dotprod.c -o leaf_vector_dotprod.o
leaf_vector_dotprod.c: In function '_dotprod_leaf_vectors':
leaf_vector_dotprod.c:55:44: warning: 'lv2_vals' may be used uninitialized [-Wmaybe-uninitialized]
   55 |                         INTEGER(lv2_offs), REAL(lv2_vals), lv2_len,
      |                                            ^~~~~~~~~~~~~~
leaf_vector_dotprod.c:46:44: note: 'lv2_vals' was declared here
   46 |         SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals;
      |                                            ^~~~~~~~
leaf_vector_dotprod.c:55:25: warning: 'lv2_offs' may be used uninitialized [-Wmaybe-uninitialized]
   55 |                         INTEGER(lv2_offs), REAL(lv2_vals), lv2_len,
      |                         ^~~~~~~~~~~~~~~~~
leaf_vector_dotprod.c:46:34: note: 'lv2_offs' was declared here
   46 |         SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals;
      |                                  ^~~~~~~~
leaf_vector_dotprod.c:54:44: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized]
   54 |                         INTEGER(lv1_offs), REAL(lv1_vals), lv1_len,
      |                                            ^~~~~~~~~~~~~~
leaf_vector_dotprod.c:46:24: note: 'lv1_vals' was declared here
   46 |         SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals;
      |                        ^~~~~~~~
leaf_vector_dotprod.c:54:25: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized]
   54 |                         INTEGER(lv1_offs), REAL(lv1_vals), lv1_len,
      |                         ^~~~~~~~~~~~~~~~~
leaf_vector_dotprod.c:46:14: note: 'lv1_offs' was declared here
   46 |         SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals;
      |              ^~~~~~~~
leaf_vector_dotprod.c: In function '_dotprod_leaf_vector_and_finite_col':
leaf_vector_dotprod.c:81:19: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized]
   81 |         vals1_p = REAL(lv1_vals);
      |                   ^~~~~~~~~~~~~~
leaf_vector_dotprod.c:74:24: note: 'lv1_vals' was declared here
   74 |         SEXP lv1_offs, lv1_vals;
      |                        ^~~~~~~~
leaf_vector_dotprod.c:80:19: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized]
   80 |         offs1_p = INTEGER(lv1_offs);
      |                   ^~~~~~~~~~~~~~~~~
leaf_vector_dotprod.c:74:14: note: 'lv1_offs' was declared here
   74 |         SEXP lv1_offs, lv1_vals;
      |              ^~~~~~~~
leaf_vector_dotprod.c: In function '_dotprod_leaf_vector_and_double_col':
leaf_vector_dotprod.c:104:19: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized]
  104 |         vals1_p = REAL(lv1_vals);
      |                   ^~~~~~~~~~~~~~
leaf_vector_dotprod.c:96:24: note: 'lv1_vals' was declared here
   96 |         SEXP lv1_offs, lv1_vals;
      |                        ^~~~~~~~
leaf_vector_dotprod.c:103:19: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized]
  103 |         offs1_p = INTEGER(lv1_offs);
      |                   ^~~~~~~~~~~~~~~~~
leaf_vector_dotprod.c:96:14: note: 'lv1_offs' was declared here
   96 |         SEXP lv1_offs, lv1_vals;
      |              ^~~~~~~~
leaf_vector_dotprod.c: In function '_dotprod_leaf_vector_and_noNA_int_col':
leaf_vector_dotprod.c:141:19: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized]
  141 |         vals1_p = INTEGER(lv1_vals);
      |                   ^~~~~~~~~~~~~~~~~
leaf_vector_dotprod.c:133:24: note: 'lv1_vals' was declared here
  133 |         SEXP lv1_offs, lv1_vals;
      |                        ^~~~~~~~
leaf_vector_dotprod.c:140:19: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized]
  140 |         offs1_p = INTEGER(lv1_offs);
      |                   ^~~~~~~~~~~~~~~~~
leaf_vector_dotprod.c:133:14: note: 'lv1_offs' was declared here
  133 |         SEXP lv1_offs, lv1_vals;
      |              ^~~~~~~~
leaf_vector_dotprod.c: In function '_dotprod_leaf_vector_and_int_col':
leaf_vector_dotprod.c:166:19: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized]
  166 |         vals1_p = INTEGER(lv1_vals);
      |                   ^~~~~~~~~~~~~~~~~
leaf_vector_dotprod.c:159:24: note: 'lv1_vals' was declared here
  159 |         SEXP lv1_offs, lv1_vals;
      |                        ^~~~~~~~
leaf_vector_dotprod.c:165:19: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized]
  165 |         offs1_p = INTEGER(lv1_offs);
      |                   ^~~~~~~~~~~~~~~~~
leaf_vector_dotprod.c:159:14: note: 'lv1_offs' was declared here
  159 |         SEXP lv1_offs, lv1_vals;
      |              ^~~~~~~~
leaf_vector_dotprod.c: In function '_dotprod0_leaf_vector':
leaf_vector_dotprod.c:222:37: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
  222 |         return _dotprod0_double_col(REAL(lv_vals), lv_len);
      |                                     ^~~~~~~~~~~~~
leaf_vector_dotprod.c:219:23: note: 'lv_vals' was declared here
  219 |         SEXP lv_offs, lv_vals;
      |                       ^~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c leaf_vector_summarization.c -o leaf_vector_summarization.o
leaf_vector_summarization.c: In function '_summarize_leaf_vector':
leaf_vector_summarization.c:21:9: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
   21 |         _summarize_Rvector(lv_vals, summarize_op, res);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
leaf_vector_summarization.c:14:23: note: 'lv_vals' was declared here
   14 |         SEXP lv_offs, lv_vals;
      |                       ^~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c leaf_vector_utils.c -o leaf_vector_utils.o
leaf_vector_utils.c: In function '_make_leaf_vector_from_bufs.part.0':
leaf_vector_utils.c:88:9: warning: 'ans_vals' may be used uninitialized [-Wmaybe-uninitialized]
   88 |         memcpy(DATAPTR(ans_vals), vals_buf, Rtype_size * buf_len);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
leaf_vector_utils.c:76:29: note: 'ans_vals' was declared here
   76 |         SEXP ans, ans_offs, ans_vals;
      |                             ^~~~~~~~
leaf_vector_utils.c:87:16: warning: 'ans_offs' may be used uninitialized [-Wmaybe-uninitialized]
   87 |         memcpy(INTEGER(ans_offs), offs_buf, sizeof(int) * buf_len);
      |                ^~~~~~~~~~~~~~~~~
leaf_vector_utils.c:76:19: note: 'ans_offs' was declared here
   76 |         SEXP ans, ans_offs, ans_vals;
      |                   ^~~~~~~~
leaf_vector_utils.c: In function '_remove_zeros_from_leaf_vector':
leaf_vector_utils.c:169:19: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
  169 |         ans_len = _collect_offsets_of_nonzero_Rsubvec_elts(
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  170 |                                 lv_vals, 0, lv_len,
      |                                 ~~~~~~~~~~~~~~~~~~~
  171 |                                 offs_buf);
      |                                 ~~~~~~~~~
leaf_vector_utils.c:165:23: note: 'lv_vals' was declared here
  165 |         SEXP lv_offs, lv_vals, ans_offs, ans_vals, ans;
      |                       ^~~~~~~
leaf_vector_utils.c:178:29: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized]
  178 |         _copy_selected_ints(INTEGER(lv_offs), offs_buf, ans_len,
      |                             ^~~~~~~~~~~~~~~~
leaf_vector_utils.c:165:14: note: 'lv_offs' was declared here
  165 |         SEXP lv_offs, lv_vals, ans_offs, ans_vals, ans;
      |              ^~~~~~~
leaf_vector_utils.c: In function '_coerce_leaf_vector':
leaf_vector_utils.c:207:43: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
  207 |         if (_coercion_can_introduce_zeros(TYPEOF(lv_vals), new_Rtype))
      |                                           ^~~~~~~~~~~~~~~
leaf_vector_utils.c:200:23: note: 'lv_vals' was declared here
  200 |         SEXP lv_offs, lv_vals, ans_vals, ans;
      |                       ^~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/include/Rdefines.h:41,
                 from leaf_vector_utils.h:4,
                 from leaf_vector_utils.c:4:
F:/biocbuild/bbs-3.17-bioc/R/include/Rinternals.h:368:25: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized]
  368 | #define PROTECT(s)      Rf_protect(s)
      |                         ^~~~~~~~~~
leaf_vector_utils.c:200:14: note: 'lv_offs' was declared here
  200 |         SEXP lv_offs, lv_vals, ans_vals, ans;
      |              ^~~~~~~
leaf_vector_utils.c: In function '_subassign_leaf_vector_with_Rvector':
leaf_vector_utils.c:294:25: warning: 'ans_vals' may be used uninitialized [-Wmaybe-uninitialized]
  294 |                         copy_Rvector_elt_FUN(lv_vals, (R_xlen_t) k1,
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  295 |                                              ans_vals, (R_xlen_t) k);
      |                                              ~~~~~~~~~~~~~~~~~~~~~~~
leaf_vector_utils.c:231:47: note: 'ans_vals' was declared here
  231 |         SEXP lv_offs, lv_vals, ans, ans_offs, ans_vals;
      |                                               ^~~~~~~~
leaf_vector_utils.c:289:22: warning: 'ans_offs' may be used uninitialized [-Wmaybe-uninitialized]
  289 |         ans_offs_p = INTEGER(ans_offs);
      |                      ^~~~~~~~~~~~~~~~~
leaf_vector_utils.c:231:37: note: 'ans_offs' was declared here
  231 |         SEXP lv_offs, lv_vals, ans, ans_offs, ans_vals;
      |                                     ^~~~~~~~
leaf_vector_utils.c:239:17: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
  239 |         Rtype = TYPEOF(lv_vals);
      |                 ^~~~~~~~~~~~~~~
leaf_vector_utils.c:231:23: note: 'lv_vals' was declared here
  231 |         SEXP lv_offs, lv_vals, ans, ans_offs, ans_vals;
      |                       ^~~~~~~
leaf_vector_utils.c:287:19: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized]
  287 |         offs1_p = INTEGER(lv_offs);
      |                   ^~~~~~~~~~~~~~~~
leaf_vector_utils.c:231:14: note: 'lv_offs' was declared here
  231 |         SEXP lv_offs, lv_vals, ans, ans_offs, ans_vals;
      |              ^~~~~~~
leaf_vector_utils.c: In function '_lv_apply_to_REALSXP':
leaf_vector_utils.c:374:20: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
  374 |         in_Rtype = TYPEOF(lv_vals);
      |                    ^~~~~~~~~~~~~~~
leaf_vector_utils.c:368:23: note: 'lv_vals' was declared here
  368 |         SEXP lv_offs, lv_vals;
      |                       ^~~~~~~
leaf_vector_utils.c:373:16: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized]
  373 |         offs = INTEGER(lv_offs);
      |                ^~~~~~~~~~~~~~~~
leaf_vector_utils.c:368:14: note: 'lv_offs' was declared here
  368 |         SEXP lv_offs, lv_vals;
      |              ^~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c matrixStats_methods.c -o matrixStats_methods.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c randomSparseArray.c -o randomSparseArray.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c readSparseCSV.c -o readSparseCSV.o
In function 'load_csv_row_to_AEbufs',
    inlined from 'read_sparse_csv' at readSparseCSV.c:342:4,
    inlined from 'C_readSparseCSV_as_SVT_SparseMatrix' at readSparseCSV.c:402:11:
readSparseCSV.c:255:25: warning: 'vals_buf' may be used uninitialized [-Wmaybe-uninitialized]
  255 |                         load_csv_data_to_AEbufs(data, data_len, col_idx - 1,
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  256 |                                                 offs_buf, vals_buf);
      |                                                 ~~~~~~~~~~~~~~~~~~~
readSparseCSV.c: In function 'C_readSparseCSV_as_SVT_SparseMatrix':
readSparseCSV.c:307:27: note: 'vals_buf' was declared here
  307 |         IntAE *offs_buf, *vals_buf;
      |                           ^~~~~~~~
In function 'load_csv_row_to_AEbufs',
    inlined from 'read_sparse_csv' at readSparseCSV.c:342:4,
    inlined from 'C_readSparseCSV_as_SVT_SparseMatrix' at readSparseCSV.c:402:11:
readSparseCSV.c:255:25: warning: 'offs_buf' may be used uninitialized [-Wmaybe-uninitialized]
  255 |                         load_csv_data_to_AEbufs(data, data_len, col_idx - 1,
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  256 |                                                 offs_buf, vals_buf);
      |                                                 ~~~~~~~~~~~~~~~~~~~
readSparseCSV.c: In function 'C_readSparseCSV_as_SVT_SparseMatrix':
readSparseCSV.c:307:16: note: 'offs_buf' was declared here
  307 |         IntAE *offs_buf, *vals_buf;
      |                ^~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c rowsum_methods.c -o rowsum_methods.o
In function 'rowsum_SVT_int',
    inlined from 'C_rowsum_SVT' at rowsum_methods.c:173:3:
rowsum_methods.c:109:25: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
  109 |                         INTEGER(lv_vals), INTEGER(lv_offs), lv_len,
      |                         ^~~~~~~~~~~~~~~~
rowsum_methods.c: In function 'C_rowsum_SVT':
rowsum_methods.c:98:31: note: 'lv_vals' was declared here
   98 |         SEXP subSVT, lv_offs, lv_vals;
      |                               ^~~~~~~
In function 'rowsum_SVT_int',
    inlined from 'C_rowsum_SVT' at rowsum_methods.c:173:3:
rowsum_methods.c:109:43: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized]
  109 |                         INTEGER(lv_vals), INTEGER(lv_offs), lv_len,
      |                                           ^~~~~~~~~~~~~~~~
rowsum_methods.c: In function 'C_rowsum_SVT':
rowsum_methods.c:98:22: note: 'lv_offs' was declared here
   98 |         SEXP subSVT, lv_offs, lv_vals;
      |                      ^~~~~~~
In function 'rowsum_SVT_double',
    inlined from 'C_rowsum_SVT' at rowsum_methods.c:168:3:
rowsum_methods.c:88:25: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized]
   88 |                         REAL(lv_vals), INTEGER(lv_offs), lv_len,
      |                         ^~~~~~~~~~~~~
rowsum_methods.c: In function 'C_rowsum_SVT':
rowsum_methods.c:78:31: note: 'lv_vals' was declared here
   78 |         SEXP subSVT, lv_offs, lv_vals;
      |                               ^~~~~~~
In function 'rowsum_SVT_double',
    inlined from 'C_rowsum_SVT' at rowsum_methods.c:168:3:
rowsum_methods.c:88:40: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized]
   88 |                         REAL(lv_vals), INTEGER(lv_offs), lv_len,
      |                                        ^~~~~~~~~~~~~~~~
rowsum_methods.c: In function 'C_rowsum_SVT':
rowsum_methods.c:78:22: note: 'lv_offs' was declared here
   78 |         SEXP subSVT, lv_offs, lv_vals;
      |                      ^~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c sparseMatrix_utils.c -o sparseMatrix_utils.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test.c -o test.o
gcc -shared -s -static-libgcc -o SparseArray.dll tmp.def ExtendableJaggedArray.o IRanges_stubs.o R_init_SparseArray.o Rvector_summarization.o Rvector_utils.o S4Vectors_stubs.o SBT_utils.o SVT_SparseArray_class.o SparseArray_Complex_methods.o SparseArray_Math_methods.o SparseArray_Ops_methods.o SparseArray_abind.o SparseArray_aperm.o SparseArray_class.o SparseArray_dim_tuning.o SparseArray_subassignment.o SparseArray_subsetting.o SparseArray_summarization.o SparseMatrix_mult.o XVector_stubs.o coerceVector2.o leaf_vector_Arith.o leaf_vector_Compare.o leaf_vector_Logic.o leaf_vector_dotprod.o leaf_vector_summarization.o leaf_vector_utils.o matrixStats_methods.o randomSparseArray.o readSparseCSV.o rowsum_methods.o sparseMatrix_utils.o test.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-SparseArray/00new/SparseArray/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SparseArray)