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This page was generated on 2023-10-16 11:35:46 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1907/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SIAMCAT 2.4.0  (landing page)
Jakob Wirbel
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/SIAMCAT
git_branch: RELEASE_3_17
git_last_commit: 026eb87
git_last_commit_date: 2023-04-25 11:02:01 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.6.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

BUILD results for SIAMCAT on nebbiolo1


To the developers/maintainers of the SIAMCAT package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SIAMCAT.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SIAMCAT
Version: 2.4.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SIAMCAT
StartedAt: 2023-10-15 18:32:12 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 18:33:25 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 72.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SIAMCAT
###
##############################################################################
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* checking for file ‘SIAMCAT/DESCRIPTION’ ... OK
* preparing ‘SIAMCAT’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SIAMCAT_confounder.Rmd’ using rmarkdown

Quitting from lines 160-179 [load_motus] (SIAMCAT_confounder.Rmd)
Error: processing vignette 'SIAMCAT_confounder.Rmd' failed with diagnostics:
HTTP error 404.
--- failed re-building ‘SIAMCAT_confounder.Rmd’

--- re-building ‘SIAMCAT_holdout.Rmd’ using rmarkdown

Quitting from lines 55-69 [siamcat_fr] (SIAMCAT_holdout.Rmd)
Error: processing vignette 'SIAMCAT_holdout.Rmd' failed with diagnostics:
cannot open the connection to 'https://zenodo.org/api/files/d81e429c-870f-44e0-a44a-2a4aa541b6c1/specI_Zeller.tsv'
--- failed re-building ‘SIAMCAT_holdout.Rmd’

--- re-building ‘SIAMCAT_meta.Rmd’ using rmarkdown

Quitting from lines 49-62 [load_data] (SIAMCAT_meta.Rmd)
Error: processing vignette 'SIAMCAT_meta.Rmd' failed with diagnostics:
HTTP error 404.
--- failed re-building ‘SIAMCAT_meta.Rmd’

--- re-building ‘SIAMCAT_ml_pitfalls.Rmd’ using rmarkdown

Quitting from lines 341-350 [load_data_ibd] (SIAMCAT_ml_pitfalls.Rmd)
Error: processing vignette 'SIAMCAT_ml_pitfalls.Rmd' failed with diagnostics:
HTTP error 404.
--- failed re-building ‘SIAMCAT_ml_pitfalls.Rmd’

--- re-building ‘SIAMCAT_read-in.Rmd’ using rmarkdown
--- finished re-building ‘SIAMCAT_read-in.Rmd’

--- re-building ‘SIAMCAT_vignette.Rmd’ using rmarkdown
--- finished re-building ‘SIAMCAT_vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘SIAMCAT_confounder.Rmd’ ‘SIAMCAT_holdout.Rmd’ ‘SIAMCAT_meta.Rmd’
  ‘SIAMCAT_ml_pitfalls.Rmd’

Error: Vignette re-building failed.
Execution halted