J. Toedling
| Snapshot Date: 2023-03-20 14:00:22 -0400 (Mon, 20 Mar 2023) |
| git_url: https://git.bioconductor.org/packages/Ringo |
| git_branch: master |
| git_last_commit: ea59b2d |
| git_last_commit_date: 2022-11-01 11:03:23 -0400 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-03-21 11:07:15 -0400 (Tue, 21 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" | 4305 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" | 4287 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences" | 4286 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the Ringo package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Ringo.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1694/2189 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Ringo 1.63.0 (landing page) J. Toedling
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: Ringo |
| Version: 1.63.0 |
| Command: rm -rf Ringo.buildbin-libdir && mkdir Ringo.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Ringo_1.63.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R Ringo.buildbin-libdir |
| StartedAt: 2023-03-21 10:00:41 -0400 (Tue, 21 Mar 2023) |
| EndedAt: 2023-03-21 10:02:31 -0400 (Tue, 21 Mar 2023) |
| EllapsedTime: 110.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: Ringo_1.63.0.tgz |
| PackageFileSize: 2.349 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf Ringo.buildbin-libdir && mkdir Ringo.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Ringo_1.63.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R Ringo.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Ringo.buildbin-libdir Ringo_1.63.0.tar.gz' >>>>>>> * installing *source* package ‘Ringo’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 11.0.0 (clang-1100.0.33.17)’ using C++ compiler: ‘Apple clang version 11.0.0 (clang-1100.0.33.17)’ using SDK: ‘’ clang++ -mmacosx-version-min=10.13 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c mmeansd.cpp -o mmeansd.o clang++ -mmacosx-version-min=10.13 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c mmedian.cpp -o mmedian.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c region_overlap.c -o region_overlap.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c ringo_init.c -o ringo_init.o clang++ -mmacosx-version-min=10.13 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Ringo.so mmeansd.o mmedian.o region_overlap.o ringo_init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.17-bioc/meat/Ringo.buildbin-libdir/00LOCK-Ringo/00new/Ringo/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘ls’ from package ‘base’ in package ‘Ringo’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Ringo) >>>>>>> >>>>>>> FIXING LINKS FOR Ringo.buildbin-libdir/Ringo/libs/Ringo.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgcc_s.1.dylib" "Ringo.buildbin-libdir/Ringo/libs/Ringo.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgfortran.5.dylib" "Ringo.buildbin-libdir/Ringo/libs/Ringo.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libquadmath.0.dylib" "Ringo.buildbin-libdir/Ringo/libs/Ringo.so"