Back to Multiple platform build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-10-16 11:37:26 -0400 (Mon, 16 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1693/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ReUseData 1.0.1 (landing page) Qian Liu
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | ERROR | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | ... NOT SUPPORTED ... | ||||||||||||
merida1 | macOS 12.6.4 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the ReUseData package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReUseData.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: ReUseData |
Version: 1.0.1 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReUseData |
StartedAt: 2023-10-15 20:39:10 -0400 (Sun, 15 Oct 2023) |
EndedAt: 2023-10-15 20:40:10 -0400 (Sun, 15 Oct 2023) |
EllapsedTime: 60.1 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReUseData ### ############################################################################## ############################################################################## * checking for file ‘ReUseData/DESCRIPTION’ ... OK * preparing ‘ReUseData’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ReUseData_data.Rmd’ using rmarkdown Quitting from lines 92-98 [unnamed-chunk-2] (ReUseData_data.Rmd) Error: processing vignette 'ReUseData_data.Rmd' failed with diagnostics: NA/NaN argument --- failed re-building ‘ReUseData_data.Rmd’ --- re-building ‘ReUseData_quickStart.Rmd’ using rmarkdown Traceback (most recent call last): File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/bin/cwltool", line 6, in <module> from cwltool.main import run File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/lib/python3.8/site-packages/cwltool/main.py", line 47, in <module> from . import CWL_CONTENT_TYPES, workflow File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/lib/python3.8/site-packages/cwltool/workflow.py", line 22, in <module> from . import command_line_tool, context, procgenerator File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/lib/python3.8/site-packages/cwltool/command_line_tool.py", line 42, in <module> from .builder import ( File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/lib/python3.8/site-packages/cwltool/builder.py", line 17, in <module> from cwl_utils import expression ModuleNotFoundError: No module named 'cwl_utils' Quitting from lines 79-88 [unnamed-chunk-4] (ReUseData_quickStart.Rmd) Error: processing vignette 'ReUseData_quickStart.Rmd' failed with diagnostics: argument is of length zero --- failed re-building ‘ReUseData_quickStart.Rmd’ --- re-building ‘ReUseData_recipe.Rmd’ using rmarkdown Traceback (most recent call last): File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/bin/cwltool", line 6, in <module> from cwltool.main import run File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/lib/python3.8/site-packages/cwltool/main.py", line 47, in <module> from . import CWL_CONTENT_TYPES, workflow File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/lib/python3.8/site-packages/cwltool/workflow.py", line 22, in <module> from . import command_line_tool, context, procgenerator File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/lib/python3.8/site-packages/cwltool/command_line_tool.py", line 42, in <module> from .builder import ( File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/lib/python3.8/site-packages/cwltool/builder.py", line 17, in <module> from cwl_utils import expression ModuleNotFoundError: No module named 'cwl_utils' Quitting from lines 166-172 [unnamed-chunk-4] (ReUseData_recipe.Rmd) Error: processing vignette 'ReUseData_recipe.Rmd' failed with diagnostics: argument is of length zero --- failed re-building ‘ReUseData_recipe.Rmd’ SUMMARY: processing the following files failed: ‘ReUseData_data.Rmd’ ‘ReUseData_quickStart.Rmd’ ‘ReUseData_recipe.Rmd’ Error: Vignette re-building failed. Execution halted