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This page was generated on 2023-10-16 11:37:04 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 789/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneSelectMMD 2.44.1  (landing page)
Weiliang Qiu
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/GeneSelectMMD
git_branch: RELEASE_3_17
git_last_commit: 57dbc8b
git_last_commit_date: 2023-05-01 20:07:25 -0400 (Mon, 01 May 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.6.4 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

INSTALL results for GeneSelectMMD on merida1


To the developers/maintainers of the GeneSelectMMD package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneSelectMMD.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: GeneSelectMMD
Version: 2.44.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL GeneSelectMMD
StartedAt: 2023-10-15 15:09:20 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 15:09:55 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 35.8 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL GeneSelectMMD
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’
* installing *source* package ‘GeneSelectMMD’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’
using SDK: ‘MacOSX11.3.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c GeneSelectMMD_init.c -o GeneSelectMMD_init.o
gfortran -arch x86_64  -fPIC  -Wall -g -O2  -c Qfunc.f -o Qfunc.o
gfortran -arch x86_64  -fPIC  -Wall -g -O2  -c blas.f -o blas.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c isnan.c -o isnan.o
gfortran -arch x86_64  -fPIC  -Wall -g -O2  -c lbfgsb.f -o lbfgsb.o
lbfgsb.f:1409:25:

 1409 |      +                 tu,tl,wmc,wmp,wmw,ddot,tj,tj0,neggi,sbgnrm,
      |                         ^
Warning: ‘tu’ may be used uninitialized [-Wmaybe-uninitialized]
lbfgsb.f:1482:72:

 1482 |                t(nbreak) = tl/(-neggi)
      |                                                                        ^
Warning: ‘tl’ may be used uninitialized [-Wmaybe-uninitialized]
lbfgsb.f:1409:28:

 1409 |      +                 tu,tl,wmc,wmp,wmw,ddot,tj,tj0,neggi,sbgnrm,
      |                            ^
note: ‘tl’ was declared here
gfortran -arch x86_64  -fPIC  -Wall -g -O2  -c lbfgsbDriver.f -o lbfgsbDriver.o
lbfgsbDriver.f:243:71:

  243 |      +                 wa(2*mmax*nmax + 5*nmax + 11*mmax*mmax + 8*mmax)
      |                                                                       1
Warning: Array ‘wa’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
gfortran -arch x86_64  -fPIC  -Wall -g -O2  -c linpack.f -o linpack.o
gfortran -arch x86_64  -fPIC  -Wall -g -O2  -c llkhFun.f -o llkhFun.o
gfortran -arch x86_64  -fPIC  -Wall -g -O2  -c myTtest.f -o myTtest.o
gfortran -arch x86_64  -fPIC  -Wall -g -O2  -c paraEstLoop.f -o paraEstLoop.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c pt.c -o pt.o
gfortran -arch x86_64  -fPIC  -Wall -g -O2  -c timer.f -o timer.o
gfortran -arch x86_64  -fPIC  -Wall -g -O2  -c wiFun.f -o wiFun.o
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o GeneSelectMMD.so GeneSelectMMD_init.o Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: could not create compact unwind for _lbfgsbdriver_: stack subq instruction is too different from dwarf stack size
installing to /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/00LOCK-GeneSelectMMD/00new/GeneSelectMMD/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GeneSelectMMD)