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This page was generated on 2023-03-23 11:06:38 -0400 (Thu, 23 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" 4536
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" 4298
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences" 4290
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for CopywriteR on merida1


To the developers/maintainers of the CopywriteR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CopywriteR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 423/2189HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CopywriteR 2.31.0  (landing page)
Oscar Krijgsman
Snapshot Date: 2023-03-22 14:00:17 -0400 (Wed, 22 Mar 2023)
git_url: https://git.bioconductor.org/packages/CopywriteR
git_branch: devel
git_last_commit: c911960
git_last_commit_date: 2022-11-01 11:11:29 -0400 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: CopywriteR
Version: 2.31.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CopywriteR
StartedAt: 2023-03-22 17:52:00 -0400 (Wed, 22 Mar 2023)
EndedAt: 2023-03-22 17:55:34 -0400 (Wed, 22 Mar 2023)
EllapsedTime: 214.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CopywriteR
###
##############################################################################
##############################################################################


* checking for file ‘CopywriteR/DESCRIPTION’ ... OK
* preparing ‘CopywriteR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CopywriteR.Rnw’ using Sweave
Loading required package: BiocParallel
Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric,  :
  pseudoinverse used at 0.979
Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric,  :
  neighborhood radius 0.001
Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric,  :
  reciprocal condition number  0
Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric,  :
  There are other near singularities as well. 1e-06

Error: processing vignette 'CopywriteR.Rnw' failed with diagnostics:
 chunk 10 (label = CopywriteR) 
Error in value[[3L]](cond) : 
  The GC-content and mappability normalization did not work due to a
  failure to calculate loesses. This can generally be solved by using
  larger bin sizes. Stopping execution of the remaining part of the
  script...

--- failed re-building ‘CopywriteR.Rnw’

SUMMARY: processing the following file failed:
  ‘CopywriteR.Rnw’

Error: Vignette re-building failed.
Execution halted