Back to Multiple platform build/check report for BioC 3.17:   simplified   long
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-10-16 11:36:52 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 207/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BioMM 1.16.0  (landing page)
Junfang Chen
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/BioMM
git_branch: RELEASE_3_17
git_last_commit: 8731949
git_last_commit_date: 2023-04-25 11:07:55 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.6.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

BUILD results for BioMM on merida1


To the developers/maintainers of the BioMM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BioMM.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BioMM
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BioMM
StartedAt: 2023-10-15 17:02:45 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 17:05:55 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 189.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BioMM
###
##############################################################################
##############################################################################


* checking for file ‘BioMM/DESCRIPTION’ ... OK
* preparing ‘BioMM’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BioMMtutorial.Rmd’ using rmarkdown

Quitting from lines 307-314 [stage2dataViz] (BioMMtutorial.Rmd)
Error: processing vignette 'BioMMtutorial.Rmd' failed with diagnostics:
BiocParallel errors
  4 remote errors, element index: 1, 14, 27, 40
  47 unevaluated and other errors
  first remote error:
Error in (function (..., row.names = NULL, check.rows = FALSE, check.names = TRUE, : 'row.names' should specify one of the variables

--- failed re-building ‘BioMMtutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘BioMMtutorial.Rmd’

Error: Vignette re-building failed.
Execution halted