Back to Build/check report for BioC 3.16 experimental data
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2022-08-16 14:50:36 -0400 (Tue, 16 Aug 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4379
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for SNAGEEdata on nebbiolo2


To the developers/maintainers of the SNAGEEdata package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 357/410HostnameOS / ArchINSTALLBUILDCHECK
SNAGEEdata 1.33.0  (landing page)
David Venet
Snapshot Date: 2022-08-16 07:30:02 -0400 (Tue, 16 Aug 2022)
git_url: https://git.bioconductor.org/packages/SNAGEEdata
git_branch: master
git_last_commit: b42d64a
git_last_commit_date: 2022-04-26 13:07:05 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SNAGEEdata
Version: 1.33.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:SNAGEEdata.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/library --no-vignettes --timings SNAGEEdata_1.33.0.tar.gz
StartedAt: 2022-08-16 11:47:19 -0400 (Tue, 16 Aug 2022)
EndedAt: 2022-08-16 11:47:31 -0400 (Tue, 16 Aug 2022)
EllapsedTime: 12.7 seconds
RetCode: 0
Status:   OK  
CheckDir: SNAGEEdata.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:SNAGEEdata.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/library --no-vignettes --timings SNAGEEdata_1.33.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/SNAGEEdata.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SNAGEEdata/DESCRIPTION’ ... OK
* this is package ‘SNAGEEdata’ version ‘1.33.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SNAGEEdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 29.3Mb
  sub-directories of 1Mb or more:
    extdata  29.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.16-data-experiment/meat/SNAGEEdata.Rcheck/00check.log’
for details.



Installation output

SNAGEEdata.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL SNAGEEdata
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/library’
* installing *source* package ‘SNAGEEdata’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SNAGEEdata)

Tests output


Example timings

SNAGEEdata.Rcheck/SNAGEEdata-Ex.timings

nameusersystemelapsed
SNAGEEdata-package0.1030.0150.119
getCC0.1020.0110.114