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This page was generated on 2022-08-18 11:07:23 -0400 (Thu, 18 Aug 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4379
palomino4Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4161
lconwaymacOS 12.2.1 Montereyx86_644.2.1 Patched (2022-07-09 r82577) -- "Funny-Looking Kid" 4169
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for TCGAbiolinksGUI on palomino4


To the developers/maintainers of the TCGAbiolinksGUI package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TCGAbiolinksGUI.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1989/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TCGAbiolinksGUI 1.23.1  (landing page)
Tiago C. Silva
Snapshot Date: 2022-08-17 14:00:04 -0400 (Wed, 17 Aug 2022)
git_url: https://git.bioconductor.org/packages/TCGAbiolinksGUI
git_branch: master
git_last_commit: 00cd41c
git_last_commit_date: 2022-05-10 10:18:05 -0400 (Tue, 10 May 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  ERROR    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
lconwaymacOS 12.2.1 Monterey / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: TCGAbiolinksGUI
Version: 1.23.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.16/bioc/src/contrib/TCGAbiolinksGUI_1.23.1.tar.gz && rm -rf TCGAbiolinksGUI.buildbin-libdir && mkdir TCGAbiolinksGUI.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAbiolinksGUI.buildbin-libdir TCGAbiolinksGUI_1.23.1.tar.gz && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL TCGAbiolinksGUI_1.23.1.zip && rm TCGAbiolinksGUI_1.23.1.tar.gz TCGAbiolinksGUI_1.23.1.zip
StartedAt: 2022-08-17 16:54:21 -0400 (Wed, 17 Aug 2022)
EndedAt: 2022-08-17 16:54:26 -0400 (Wed, 17 Aug 2022)
EllapsedTime: 4.6 seconds
RetCode: 1
Status:   ERROR  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.16/bioc/src/contrib/TCGAbiolinksGUI_1.23.1.tar.gz && rm -rf TCGAbiolinksGUI.buildbin-libdir && mkdir TCGAbiolinksGUI.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAbiolinksGUI.buildbin-libdir TCGAbiolinksGUI_1.23.1.tar.gz && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL TCGAbiolinksGUI_1.23.1.zip && rm TCGAbiolinksGUI_1.23.1.tar.gz TCGAbiolinksGUI_1.23.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 33 7160k   33 2376k    0     0  7515k      0 --:--:-- --:--:-- --:--:-- 7521k
100 7160k  100 7160k    0     0  7633k      0 --:--:-- --:--:-- --:--:-- 7633k
only one architecture so ignoring '--merge-multiarch'
* installing *source* package 'TCGAbiolinksGUI' ...
** using staged installation
** R
Error in parse(outFile) : 
  F:/biocbuild/bbs-3.16-bioc/tmpdir/RtmpYrJjoC/R.INSTALL44b47073714e/TCGAbiolinksGUI/R/zzz.R:28:1: unexpected '}'
27: }
28: }
    ^
ERROR: unable to collate and parse R files for package 'TCGAbiolinksGUI'
* removing 'F:/biocbuild/bbs-3.16-bioc/meat/TCGAbiolinksGUI.buildbin-libdir/TCGAbiolinksGUI'