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This page was generated on 2023-03-27 11:04:51 -0400 (Mon, 27 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4480
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4276
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4304
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for ASpli on nebbiolo2


To the developers/maintainers of the ASpli package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ASpli.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 87/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ASpli 2.8.0  (landing page)
Estefania Mancini
Snapshot Date: 2023-03-24 14:00:04 -0400 (Fri, 24 Mar 2023)
git_url: https://git.bioconductor.org/packages/ASpli
git_branch: RELEASE_3_16
git_last_commit: ff40685
git_last_commit_date: 2022-11-01 11:14:10 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ASpli
Version: 2.8.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:ASpli.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings ASpli_2.8.0.tar.gz
StartedAt: 2023-03-24 18:51:53 -0400 (Fri, 24 Mar 2023)
EndedAt: 2023-03-24 19:12:37 -0400 (Fri, 24 Mar 2023)
EllapsedTime: 1243.9 seconds
RetCode: 0
Status:   OK  
CheckDir: ASpli.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:ASpli.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings ASpli_2.8.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/ASpli.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘ASpli/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ASpli’ version ‘2.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ASpli’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
ASpli-package           141.092  1.428 142.328
jDUreport                75.283  0.280  75.460
exportIntegratedSignals  74.513  0.395  74.814
splicingReport           74.122  0.326  74.342
exportSplicingReports    73.614  0.288  73.804
integrateSignals         73.168  0.315  73.384
jCounts-methods          72.208  0.328  72.427
gbDUreport-method        70.934  0.272  71.084
gbCounts                 69.338  0.252  69.489
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘ASpli.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

ASpli.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL ASpli
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘ASpli’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ASpli)

Tests output


Example timings

ASpli.Rcheck/ASpli-Ex.timings

nameusersystemelapsed
ASpli-package141.092 1.428142.328
DUreport000
DUreport.norm000
DUreport.offset000
DUreportBinSplice-method000
acc_AS0.0010.0000.000
acc_DU000
acc_counts0.0010.0000.000
acc_features0.1680.0000.167
binGenome3.5970.0003.597
containsJunctions-function000
example_data0.0000.0000.001
exportIntegratedSignals74.513 0.39574.814
exportSplicingReports73.614 0.28873.804
filterDU-method0.0010.0000.000
filterSignals000
gbCounts69.338 0.25269.489
gbDUreport-method70.934 0.27271.084
getConditions-function000
integrateSignals73.168 0.31573.384
jCounts-methods72.208 0.32872.427
jDUreport75.283 0.28075.460
junctionDUreport000
loadBAM000
mergeBinDUAS-method0.0010.0000.000
plotBins0.0000.0000.001
plotGenomicRegions0.0000.0010.000
rds000
splicingReport74.122 0.32674.342
subset-methods000