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This page was generated on 2022-07-01 12:05:25 -0400 (Fri, 01 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4380
palomino3Windows Server 2022 Datacenterx644.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics" 4156
merida1macOS 10.14.6 Mojavex86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4221
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for imageHTS on nebbiolo1


To the developers/maintainers of the imageHTS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/imageHTS.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 946/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
imageHTS 1.46.0  (landing page)
Joseph Barry
Snapshot Date: 2022-06-30 13:55:04 -0400 (Thu, 30 Jun 2022)
git_url: https://git.bioconductor.org/packages/imageHTS
git_branch: RELEASE_3_15
git_last_commit: 9c5ea7c
git_last_commit_date: 2022-04-26 11:05:32 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    OK    ERROR    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    ERROR    OK  

Summary

Package: imageHTS
Version: 1.46.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data imageHTS
StartedAt: 2022-06-30 16:43:51 -0400 (Thu, 30 Jun 2022)
EndedAt: 2022-06-30 16:46:18 -0400 (Thu, 30 Jun 2022)
EllapsedTime: 147.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data imageHTS
###
##############################################################################
##############################################################################


* checking for file ‘imageHTS/DESCRIPTION’ ... OK
* preparing ‘imageHTS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘imageHTS-introduction.Rnw’ using Sweave
Loading required package: EBImage

Attaching package: ‘EBImage’

The following object is masked _by_ ‘.GlobalEnv’:

    display

Loading required package: cellHTS2
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: ‘Biobase’

The following object is masked from ‘package:EBImage’:

    channel

Loading required package: genefilter
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
locfit 1.5-9.5 	 2022-03-01
Loading required package: grid
Warning in nx < 1 || lwd < 0 :
  'length(x) = 2 > 1' in coercion to 'logical(1)'
Warning in nx < 1 || lwd < 0 :
  'length(x) = 2 > 1' in coercion to 'logical(1)'
trying URL 'http://www.huber.embl.de/cellmorph/kimorph//conf/imageconf.txt'
Content type 'text/plain; charset=UTF-8' length 374 bytes
==================================================
downloaded 374 bytes

trying URL 'http://www.huber.embl.de/cellmorph/kimorph//conf/description.txt'
Warning in fileHTS(object, type = "file", filename = descripFile, access = access) :
  cannot download the file pointed by "http://www.huber.embl.de/cellmorph/kimorph//conf/description.txt" to the location "/tmp/RtmpHPfiOX/kimorph/conf/description.txt"
trying URL 'http://www.huber.embl.de/cellmorph/kimorph//conf/plateconf.txt'
Content type 'text/plain; charset=UTF-8' length 415 bytes
==================================================
downloaded 415 bytes

trying URL 'http://www.huber.embl.de/cellmorph/kimorph//conf/screenlog.txt'
Content type 'text/plain; charset=UTF-8' length 110 bytes
==================================================
downloaded 110 bytes


Error: processing vignette 'imageHTS-introduction.Rnw' failed with diagnostics:
 chunk 28 (label = init) 
Error in (function (filename, path, ...)  : 
  The file 'description.txt' could not be found in the given path '/tmp/RtmpHPfiOX/kimorph/conf'.

--- failed re-building ‘imageHTS-introduction.Rnw’

SUMMARY: processing the following file failed:
  ‘imageHTS-introduction.Rnw’

Error: Vignette re-building failed.
Execution halted