Back to Multiple platform build/check report for BioC 3.15
ABCDE[F]GHIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-05-16 11:07:40 -0400 (Mon, 16 May 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4379
palomino3Windows Server 2022 Datacenterx644.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics" 4153
merida1macOS 10.14.6 Mojavex86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4220
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for flowStats on merida1


To the developers/maintainers of the flowStats package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowStats.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 693/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowStats 4.8.0  (landing page)
Greg Finak , Mike Jiang , Jake Wagner
Snapshot Date: 2022-05-15 13:55:12 -0400 (Sun, 15 May 2022)
git_url: https://git.bioconductor.org/packages/flowStats
git_branch: RELEASE_3_15
git_last_commit: aa6d4ca
git_last_commit_date: 2022-04-26 11:02:55 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: flowStats
Version: 4.8.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowStats
StartedAt: 2022-05-15 18:25:41 -0400 (Sun, 15 May 2022)
EndedAt: 2022-05-15 18:26:54 -0400 (Sun, 15 May 2022)
EllapsedTime: 73.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowStats
###
##############################################################################
##############################################################################


* checking for file ‘flowStats/DESCRIPTION’ ... OK
* preparing ‘flowStats’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GettingStartedWithFlowStats.Rnw’ using Sweave
Warning: replacing previous import ‘flowViz::contour’ by ‘graphics::contour’ when loading ‘flowStats’
As part of improvements to flowWorkspace, some behavior of
GatingSet objects has changed. For details, please read the section
titled "The cytoframe and cytoset classes" in the package vignette:

  vignette("flowWorkspace-Introduction", "flowWorkspace")
Loading required package: ggplot2
Loading required package: ncdfFlow
Loading required package: RcppArmadillo
Loading required package: BH
Loading required package: scales
done!
Loading required package: ggridges
Loading required package: gridExtra
Picking joint bandwidth of 0.311
Picking joint bandwidth of 0.131
Picking joint bandwidth of 0.26
Picking joint bandwidth of 0.157
Warning in rep(sig, length = 2) :
  'x' is NULL so the result will be NULL
done!
cloning the gatingSet...
Normalize CD4+CD8+

Error: processing vignette 'GettingStartedWithFlowStats.Rnw' failed with diagnostics:
 chunk 7 (label = quad_gate_norm) 
Error in landmarkreg(fdobj, landmarks, WfdPar = WfdPar, monwrd = monwrd,  : 
  unused argument (monwrd = monwrd)

--- failed re-building ‘GettingStartedWithFlowStats.Rnw’

SUMMARY: processing the following file failed:
  ‘GettingStartedWithFlowStats.Rnw’

Error: Vignette re-building failed.
Execution halted