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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:epivizrChart.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings epivizrChart_1.17.1.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/epivizrChart.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'epivizrChart/DESCRIPTION' ... OK
* this is package 'epivizrChart' version '1.17.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'epivizrChart' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.8Mb
  sub-directories of 1Mb or more:
    data   2.1Mb
    www    3.8Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'epivizrServer'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbuild/bbs-3.15-bioc/meat/epivizrChart.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL epivizrChart
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'epivizrChart' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'GenomicFeatures::proteinToGenome' by 'ensembldb::proteinToGenome' when loading 'epivizrData'
** help
*** installing help indices
  converting help for package 'epivizrChart'
    finding HTML links ... done
    BlocksTrack-methods                     html  
    EpivizBlocksTrack-class                 html  
    EpivizChart-class                       html  
    EpivizChartDataMgr-class                html  
    EpivizDataSource-class                  html  
    EpivizEnvironment-class                 html  
    EpivizGenesTrack-class                  html  
    EpivizHeatmapPlot-class                 html  
    EpivizIGVTrack-class                    html  
    EpivizLinePlot-class                    html  
    EpivizLineTrack-class                   html  
    EpivizNavigation-class                  html  
    EpivizScatterPlot-class                 html  
    EpivizStackedBlocksTrack-class          html  
    EpivizStackedLinePlot-class             html  
    EpivizStackedLineTrack-class            html  
    EpivizViewComponent-class               html  
    finding level-2 HTML links ... done

    EpivizWebComponent-class                html  
    HeatmapPlot-methods                     html  
    LinePlot-methods                        html  
    LineTrack-methods                       html  
    ScatterPlot-methods                     html  
    StackedBlocksTrack-methods              html  
    StackedLinePlot-methods                 html  
    StackedLineTrack-methods                html  
    append_region-methods                   html  
    bcode_eset                              html  
    cgi_gr                                  html  
    chart_default_settings_colors           html  
    dot-constructURL                        html  
    dot-initialize_chart                    html  
    dot-register_all_the_epiviz_things      html  
    dot-settings_as_df                      html  
    epivizChart                             html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-epivizrChart/00new/epivizrChart/help/epivizChart.html
    epivizEnv                               html  
    epivizNav                               html  
    get_available_chart_types               html  
    get_registered_data_types               html  
    json_parser                             html  
    json_writer                             html  
    plot-EpivizEnvironment-ANY-method       html  
    rand_id                                 html  
    sumexp                                  html  
    tcga_colon_blocks                       html  
    tcga_colon_curves                       html  
    tcga_colon_expression                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'GenomicFeatures::proteinToGenome' by 'ensembldb::proteinToGenome' when loading 'epivizrData'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'GenomicFeatures::proteinToGenome' by 'ensembldb::proteinToGenome' when loading 'epivizrData'
** testing if installed package keeps a record of temporary installation path
* DONE (epivizrChart)
Making 'packages.html' ... done

R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(epivizrChart)
Warning message:
replacing previous import 'GenomicFeatures::proteinToGenome' by 'ensembldb::proteinToGenome' when loading 'epivizrData' 
> 
> test_check("epivizrChart")
[ FAIL 0 | WARN 0 | SKIP 8 | PASS 0 ]

== Skipped tests ===============================================================
* On Bioconductor (8)

[ FAIL 0 | WARN 0 | SKIP 8 | PASS 0 ]
> 
> proc.time()
   user  system elapsed 
   9.34    0.93   10.26