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This page was generated on 2022-06-27 11:09:53 -0400 (Mon, 27 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4380
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for drugTargetInteractions on nebbiolo1


To the developers/maintainers of the drugTargetInteractions package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/drugTargetInteractions.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 565/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
drugTargetInteractions 1.4.0  (landing page)
Thomas Girke
Snapshot Date: 2022-06-26 13:55:11 -0400 (Sun, 26 Jun 2022)
git_url: https://git.bioconductor.org/packages/drugTargetInteractions
git_branch: RELEASE_3_15
git_last_commit: b1de6ca
git_last_commit_date: 2022-04-26 12:14:13 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: drugTargetInteractions
Version: 1.4.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:drugTargetInteractions.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings drugTargetInteractions_1.4.0.tar.gz
StartedAt: 2022-06-26 19:40:08 -0400 (Sun, 26 Jun 2022)
EndedAt: 2022-06-26 19:44:57 -0400 (Sun, 26 Jun 2022)
EllapsedTime: 289.3 seconds
RetCode: 0
Status:   OK  
CheckDir: drugTargetInteractions.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:drugTargetInteractions.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings drugTargetInteractions_1.4.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/drugTargetInteractions.Rcheck’
* using R version 4.2.0 (2022-04-22)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘drugTargetInteractions/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘drugTargetInteractions’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘drugTargetInteractions’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.getCacheFile: no visible binding for global variable 'create_time'
getParalogs: no visible global function definition for 'setNames'
Undefined global functions or variables:
  create_time setNames
Consider adding
  importFrom("stats", "setNames")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
drugTargetAnnotTable 37.520  1.484  39.014
processDrugage       31.316  1.012  32.817
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.15-bioc/meat/drugTargetInteractions.Rcheck/00check.log’
for details.



Installation output

drugTargetInteractions.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL drugTargetInteractions
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘drugTargetInteractions’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (drugTargetInteractions)

Tests output


Example timings

drugTargetInteractions.Rcheck/drugTargetInteractions-Ex.timings

nameusersystemelapsed
cmpIdMapping0.0010.0000.001
downloadChemblDb0.0010.0010.000
downloadUniChem0.7560.0681.682
drugTargetAnnot0.0190.0040.025
drugTargetAnnotTable37.520 1.48439.014
drugTargetBioactivity0.0770.0000.078
genConfig000
getDrugTarget0.0060.0120.018
getParalogs000
getSymEnsUp1.6340.1641.808
getUniprotIDs000
processDrugage31.316 1.01232.817
runDrugTarget_Annot_Bioassay0.7540.0200.773
transformTTD3.8790.2164.995