Aaron Taudt
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/chromstaR |
| git_branch: master |
| git_last_commit: 79057fd |
| git_last_commit_date: 2021-12-14 21:44:02 -0400 (Tue, 14 Dec 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:11 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the chromstaR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/chromstaR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 312/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| chromstaR 1.21.4 (landing page) Aaron Taudt
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: chromstaR |
| Version: 1.21.4 |
| Command: rm -rf chromstaR.buildbin-libdir && mkdir chromstaR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=chromstaR.buildbin-libdir chromstaR_1.21.4.tar.gz |
| StartedAt: 2022-03-17 20:59:57 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 21:01:24 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 87.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: chromstaR_1.21.4.zip |
| PackageFileSize: 6.701 MiB |
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### Running command:
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### rm -rf chromstaR.buildbin-libdir && mkdir chromstaR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=chromstaR.buildbin-libdir chromstaR_1.21.4.tar.gz
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* installing *source* package 'chromstaR' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c R_interface.cpp -o R_interface.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c densities.cpp -o densities.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c init.cpp -o init.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c scalehmm.cpp -o scalehmm.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c utility.cpp -o utility.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o chromstaR.dll tmp.def R_interface.o densities.o init.o scalehmm.o utility.o -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/chromstaR.buildbin-libdir/00LOCK-chromstaR/00new/chromstaR/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'chromstaR'
finding HTML links ... done
Chromstar html
binReads html
finding level-2 HTML links ... done
binned.data html
callPeaksMultivariate html
callPeaksReplicates html
callPeaksUnivariate html
callPeaksUnivariateAllChr html
changeMaxPostCutoff html
changePostCutoff html
chromstaR-objects html
chromstaR-package html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/meat/chromstaR.buildbin-libdir/00LOCK-chromstaR/00new/chromstaR/help/chromstaR.html
collapseBins html
combinatorialStates html
combineMultivariates html
combinedMultiHMM html
conversion html
enrichmentAtAnnotation html
enrichment_analysis html
experiment.table html
exportFiles html
exportGRangesAsBedFile html
fixedWidthBins html
genes_rn4 html
genomicFrequencies html
getCombinations html
getDistinctColors html
getStateColors html
heatmapCombinations html
heatmapCountCorrelation html
heatmapTransitionProbs html
loadHmmsFromFiles html
mergeChroms html
model.combined html
model.multivariate html
model.univariate html
multiHMM html
multivariateSegmentation html
plotExpression html
plotGenomeBrowser html
plotHistogram html
plotHistograms html
plotting html
print.combinedMultiHMM html
print.multiHMM html
print.uniHMM html
readBamFileAsGRanges html
readBedFileAsGRanges html
readConfig html
readCustomBedFile html
removeCondition html
scanBinsizes html
scores html
simulateMultivariate html
simulateReadsFromCounts html
simulateUnivariate html
state.brewer html
stateBrewer html
subsample html
transitionFrequencies html
uniHMM html
unis2pseudomulti html
variableWidthBins html
writeConfig html
zinbinom html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'chromstaR' as chromstaR_1.21.4.zip
* DONE (chromstaR)