Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-10-19 13:22:07 -0400 (Wed, 19 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
palomino3Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4138
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for RCX on palomino3


To the developers/maintainers of the RCX package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RCX.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1594/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RCX 1.0.1  (landing page)
Florian Auer
Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/RCX
git_branch: RELEASE_3_15
git_last_commit: 95d04a4
git_last_commit_date: 2022-10-05 10:36:28 -0400 (Wed, 05 Oct 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: RCX
Version: 1.0.1
Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:RCX.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings RCX_1.0.1.tar.gz
StartedAt: 2022-10-19 03:18:10 -0400 (Wed, 19 Oct 2022)
EndedAt: 2022-10-19 03:19:13 -0400 (Wed, 19 Oct 2022)
EllapsedTime: 63.1 seconds
RetCode: 0
Status:   OK  
CheckDir: RCX.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:RCX.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings RCX_1.0.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/RCX.Rcheck'
* using R version 4.2.1 (2022-06-23 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'RCX/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RCX' version '1.0.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RCX' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

RCX.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL RCX
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'RCX' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RCX)

Tests output

RCX.Rcheck/tests/testthat.Rout


R version 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(RCX)
> 
> test_check("RCX")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 60 ]
> 
> proc.time()
   user  system elapsed 
   2.62    0.18    2.85 

Example timings

RCX.Rcheck/RCX-Ex.timings

nameusersystemelapsed
CartesianLayout000
Convert-Names-and-Classes000
CyGroups0.020.000.01
CyHiddenAttributes0.230.010.25
CyNetworkRelations0.020.000.02
CySubNetworks000
CyTableColumn0.010.000.01
CyVisualProperties0.020.000.02
CyVisualProperty0.020.000.01
CyVisualPropertyDependencies000
CyVisualPropertyMappings000
CyVisualPropertyProperties0.020.000.02
EdgeAttributes0.010.000.01
Edges000
Igraph2.630.062.69
Meta-data0.030.000.03
NetworkAttributes0.010.000.02
NodeAttributes0.030.000.03
Nodes000
RCX-object0.320.020.33
aspectClasses000
checks000
convert-data-types-and-values000
convert2json000
countElements0.020.000.02
custom-print0.010.000.01
dot-addAspectNameToJson000
dot-addAttributeData000
dot-aspectClass000
dot-convertRawList000
dot-createAttributeAspect000
dot-createCyVpPorD000
dot-filterBy000
dot-format000
dot-infer000
dot-json2RDataType000
dot-jsonL000
dot-jsonV000
dot-log000
dot-mergeAttributesAspect000
dot-mergeIdAspect000
dot-modClass000
dot-pasteC000
dot-renameDF0.020.000.01
dot-stop000
dot-summaryAspect000
dot-transformListLength-set000
dot-transformVLD0.010.000.02
getCyVisualProperty0.020.000.02
graphNEL2.700.032.73
hasIds000
idProperty000
jsonToRCX000
markAttributeColumn0.020.000.02
markRefColumn000
maxId000
rcxToJson000
readCX0.640.010.65
referredBy000
refersTo000
summary0.020.000.02
toCX0.010.000.01
updateCartesianLayout0.030.000.03
updateCyGroups0.020.000.02
updateCyHiddenAttributes0.040.000.04
updateCyNetworkRelations0.050.000.05
updateCySubNetworks0.020.000.02
updateCyTableColumn0.040.000.04
updateCyVisualProperties0.210.030.24
updateCyVisualProperty0.060.000.06
updateEdgeAttributes0.050.000.05
updateEdges0.010.000.01
updateMetaDataProperties0.020.000.02
updateNetworkAttributes0.040.000.04
updateNodeAttributes0.070.000.07
updateNodes0.010.000.01
validate0.320.020.33
visualize0.010.000.02
writeCX000
writeHTML0.190.041.11