Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-10-19 13:20:45 -0400 (Wed, 19 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
palomino3Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4138
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for RCX on nebbiolo1


To the developers/maintainers of the RCX package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RCX.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1594/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RCX 1.0.1  (landing page)
Florian Auer
Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/RCX
git_branch: RELEASE_3_15
git_last_commit: 95d04a4
git_last_commit_date: 2022-10-05 10:36:28 -0400 (Wed, 05 Oct 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: RCX
Version: 1.0.1
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:RCX.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings RCX_1.0.1.tar.gz
StartedAt: 2022-10-18 21:23:10 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 21:23:49 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 39.0 seconds
RetCode: 0
Status:   OK  
CheckDir: RCX.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:RCX.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings RCX_1.0.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/RCX.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RCX/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RCX’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RCX’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

RCX.Rcheck/00install.out

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##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL RCX
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘RCX’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RCX)

Tests output

RCX.Rcheck/tests/testthat.Rout


R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(RCX)
> 
> test_check("RCX")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 60 ]
> 
> proc.time()
   user  system elapsed 
  2.304   0.084   2.372 

Example timings

RCX.Rcheck/RCX-Ex.timings

nameusersystemelapsed
CartesianLayout0.0040.0000.004
Convert-Names-and-Classes0.0000.0000.001
CyGroups0.0040.0000.004
CyHiddenAttributes0.1180.0000.117
CyNetworkRelations0.0010.0000.002
CySubNetworks0.0020.0000.003
CyTableColumn0.0040.0000.005
CyVisualProperties0.0120.0040.015
CyVisualProperty0.0100.0000.011
CyVisualPropertyDependencies0.0060.0000.006
CyVisualPropertyMappings0.0040.0000.004
CyVisualPropertyProperties0.0030.0000.003
EdgeAttributes0.0140.0000.014
Edges0.0020.0000.001
Igraph2.2160.0362.252
Meta-data0.0220.0000.022
NetworkAttributes0.0060.0040.009
NodeAttributes0.0140.0000.014
Nodes0.0010.0000.002
RCX-object0.2440.0000.244
aspectClasses0.0020.0000.001
checks0.0010.0000.000
convert-data-types-and-values0.0020.0000.002
convert2json0.0000.0000.001
countElements0.0080.0000.007
custom-print0.0050.0000.005
dot-addAspectNameToJson0.0000.0000.001
dot-addAttributeData000
dot-aspectClass0.0000.0010.001
dot-convertRawList0.0000.0000.001
dot-createAttributeAspect0.0000.0000.001
dot-createCyVpPorD0.0000.0010.000
dot-filterBy0.0000.0000.001
dot-format0.0000.0000.001
dot-infer000
dot-json2RDataType0.0010.0000.001
dot-jsonL0.0010.0010.001
dot-jsonV0.0000.0010.001
dot-log0.0000.0000.001
dot-mergeAttributesAspect0.0000.0010.000
dot-mergeIdAspect000
dot-modClass000
dot-pasteC000
dot-renameDF0.0010.0000.002
dot-stop000
dot-summaryAspect0.0000.0010.002
dot-transformListLength-set0.0020.0000.002
dot-transformVLD0.0050.0000.005
getCyVisualProperty0.0060.0040.009
graphNEL2.4780.0002.511
hasIds0.0010.0000.001
idProperty0.0010.0000.001
jsonToRCX0.0020.0000.002
markAttributeColumn0.0010.0000.001
markRefColumn0.0010.0000.001
maxId0.0010.0000.001
rcxToJson0.0030.0000.003
readCX0.5690.0240.593
referredBy0.0070.0000.007
refersTo0.0010.0000.001
summary0.0070.0040.011
toCX0.010.000.01
updateCartesianLayout0.0380.0040.042
updateCyGroups0.0230.0030.026
updateCyHiddenAttributes0.0410.0000.041
updateCyNetworkRelations0.0340.0000.033
updateCySubNetworks0.0290.0000.028
updateCyTableColumn0.0350.0040.039
updateCyVisualProperties0.2190.0000.219
updateCyVisualProperty0.0630.0000.063
updateEdgeAttributes0.0420.0000.042
updateEdges0.0180.0000.019
updateMetaDataProperties0.0230.0000.023
updateNetworkAttributes0.0390.0000.039
updateNodeAttributes0.0490.0000.049
updateNodes0.0130.0000.013
validate0.2330.0000.232
visualize0.0080.0000.008
writeCX0.0010.0000.000
writeHTML0.0510.0240.079