Back to Multiple platform build/check report for BioC 3.15
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2022-07-01 12:06:48 -0400 (Fri, 01 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4380
palomino3Windows Server 2022 Datacenterx644.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics" 4156
merida1macOS 10.14.6 Mojavex86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4221
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for MethReg on palomino3


To the developers/maintainers of the MethReg package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MethReg.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1144/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MethReg 1.6.0  (landing page)
Tiago Silva
Snapshot Date: 2022-06-30 13:55:04 -0400 (Thu, 30 Jun 2022)
git_url: https://git.bioconductor.org/packages/MethReg
git_branch: RELEASE_3_15
git_last_commit: 41583fc
git_last_commit_date: 2022-04-26 12:08:37 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: MethReg
Version: 1.6.0
Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MethReg.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings MethReg_1.6.0.tar.gz
StartedAt: 2022-07-01 01:36:08 -0400 (Fri, 01 Jul 2022)
EndedAt: 2022-07-01 01:42:43 -0400 (Fri, 01 Jul 2022)
EllapsedTime: 394.5 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: MethReg.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MethReg.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings MethReg_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/MethReg.Rcheck'
* using R version 4.2.0 (2022-04-22 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'MethReg/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MethReg' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MethReg' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'methReg_analysis'
  'tf.dnam.classifier.pval.threshold'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                               user system elapsed
create_triplet_distance_based 26.39   2.86   65.09
create_triplet_regulon_based  20.81   0.97   21.85
get_tf_in_region              18.91   0.82   19.72
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  'F:/biocbuild/bbs-3.15-bioc/meat/MethReg.Rcheck/00check.log'
for details.



Installation output

MethReg.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MethReg
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'MethReg' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MethReg)

Tests output

MethReg.Rcheck/tests/testthat.Rout


R version 4.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(MethReg)
> 
> test_check("MethReg")

|                                                    |  0%                      
|====================================================|100% ~0 s remaining       
|====================================================|100%                      Completed after 0 s 

|                                                    |  0%                      
|====================================================|100% ~0 s remaining       
|====================================================|100%                      Completed after 0 s 

|                                                    |  0%                      
|====================================================|100% ~0 s remaining       
|====================================================|100%                      Completed after 0 s 

|                                                    |  0%                      
|====================================================|100% ~0 s remaining       
|====================================================|100%                      Completed after 0 s 

|                                                    |  0%                      
|                                                    |0.1805054% ~0 s remaining 
|                                                    |0.3610108% ~0 s remaining 
|                                                    |0.5415162% ~0 s remaining 
|                                                    |0.7220217% ~0 s remaining 
|                                                    |0.9025271% ~0 s remaining 
|                                                    |1.083032% ~0 s remaining  
|                                                    |1.263538% ~0 s remaining  
|                                                    |1.444043% ~0 s remaining  
|                                                    |1.624549% ~0 s remaining  
|                                                    |1.805054% ~0 s remaining  
|=                                                   |1.98556% ~0 s remaining   
|=                                                   |2.166065% ~0 s remaining  
|=                                                   |2.34657% ~0 s remaining   
|=                                                   |2.527076% ~0 s remaining  
|=                                                   |2.707581% ~0 s remaining  
|=                                                   |2.888087% ~0 s remaining  
|=                                                   |3.068592% ~0 s remaining  
|=                                                   |3.249097% ~0 s remaining  
|=                                                   |3.429603% ~0 s remaining  
|=                                                   |3.610108% ~0 s remaining  
|=                                                   |3.790614% ~0 s remaining  
|==                                                  |3.971119% ~0 s remaining  
|==                                                  |4.151625% ~0 s remaining  
|==                                                  |4.33213% ~0 s remaining   
|==                                                  |4.512635% ~0 s remaining  
|==                                                  |4.693141% ~0 s remaining  
|==                                                  |4.873646% ~0 s remaining  
|==                                                  |5.054152% ~0 s remaining  
|==                                                  |5.234657% ~0 s remaining  
|==                                                  |5.415162% ~0 s remaining  
|==                                                  |5.595668% ~0 s remaining  
|===                                                 |5.776173% ~0 s remaining  
|===                                                 |5.956679% ~0 s remaining  
|===                                                 |6.137184% ~0 s remaining  
|===                                                 |6.31769% ~0 s remaining   
|===                                                 |6.498195% ~0 s remaining  
|===                                                 |6.6787% ~0 s remaining    
|===                                                 |6.859206% ~0 s remaining  
|===                                                 |7.039711% ~0 s remaining  
|===                                                 |7.220217% ~0 s remaining  
|===                                                 |7.400722% ~0 s remaining  
|===                                                 |7.581227% ~1 s remaining  
|====                                                |7.761733% ~1 s remaining  
|====                                                |7.942238% ~1 s remaining  
|====                                                |8.122744% ~1 s remaining  
|====                                                |8.303249% ~1 s remaining  
|====                                                |8.483755% ~1 s remaining  
|====                                                |8.66426% ~1 s remaining   
|====                                                |8.844765% ~1 s remaining  
|====                                                |9.025271% ~1 s remaining  
|====                                                |9.205776% ~1 s remaining  
|====                                                |9.386282% ~1 s remaining  
|====                                                |9.566787% ~1 s remaining  
|=====                                               |9.747292% ~1 s remaining  
|=====                                               |9.927798% ~1 s remaining  
|=====                                               |10.1083% ~1 s remaining   
|=====                                               |10.28881% ~1 s remaining  
|=====                                               |10.46931% ~1 s remaining  
|=====                                               |10.64982% ~1 s remaining  
|=====                                               |10.83032% ~1 s remaining  
|=====                                               |11.01083% ~1 s remaining  
|=====                                               |11.19134% ~1 s remaining  
|=====                                               |11.37184% ~1 s remaining  
|======                                              |11.55235% ~1 s remaining  
|======                                              |11.73285% ~1 s remaining  
|======                                              |11.91336% ~1 s remaining  
|======                                              |12.09386% ~1 s remaining  
|======                                              |12.27437% ~1 s remaining  
|======                                              |12.45487% ~0 s remaining  
|======                                              |12.63538% ~0 s remaining  
|======                                              |12.81588% ~0 s remaining  
|======                                              |12.99639% ~0 s remaining  
|======                                              |13.1769% ~0 s remaining   
|======                                              |13.3574% ~1 s remaining   
|=======                                             |13.53791% ~1 s remaining  
|=======                                             |13.71841% ~1 s remaining  
|=======                                             |13.89892% ~1 s remaining  
|=======                                             |14.07942% ~1 s remaining  
|=======                                             |14.25993% ~1 s remaining  
|=======                                             |14.44043% ~1 s remaining  
|=======                                             |14.62094% ~1 s remaining  
|=======                                             |14.80144% ~1 s remaining  
|=======                                             |14.98195% ~1 s remaining  
|=======                                             |15.16245% ~1 s remaining  
|=======                                             |15.34296% ~0 s remaining  
|========                                            |15.52347% ~0 s remaining  
|========                                            |15.70397% ~0 s remaining  
|========                                            |15.88448% ~0 s remaining  
|========                                            |16.06498% ~0 s remaining  
|========                                            |16.24549% ~0 s remaining  
|========                                            |16.42599% ~0 s remaining  
|========                                            |16.6065% ~0 s remaining   
|========                                            |16.787% ~0 s remaining    
|========                                            |16.96751% ~0 s remaining  
|========                                            |17.14801% ~1 s remaining  
|=========                                           |17.32852% ~1 s remaining  
|=========                                           |17.50903% ~1 s remaining  
|=========                                           |17.68953% ~1 s remaining  
|=========                                           |17.87004% ~1 s remaining  
|=========                                           |18.05054% ~0 s remaining  
|=========                                           |18.23105% ~0 s remaining  
|=========                                           |18.41155% ~0 s remaining  
|=========                                           |18.59206% ~0 s remaining  
|=========                                           |18.77256% ~0 s remaining  
|=========                                           |18.95307% ~0 s remaining  
|=========                                           |19.13357% ~0 s remaining  
|==========                                          |19.31408% ~0 s remaining  
|==========                                          |19.49458% ~0 s remaining  
|==========                                          |19.67509% ~0 s remaining  
|==========                                          |19.8556% ~0 s remaining   
|==========                                          |20.0361% ~0 s remaining   
|==========                                          |20.21661% ~0 s remaining  
|==========                                          |20.39711% ~0 s remaining  
|==========                                          |20.57762% ~0 s remaining  
|==========                                          |20.75812% ~0 s remaining  
|==========                                          |20.93863% ~0 s remaining  
|==========                                          |21.11913% ~0 s remaining  
|===========                                         |21.29964% ~0 s remaining  
|===========                                         |21.48014% ~0 s remaining  
|===========                                         |21.66065% ~0 s remaining  
|===========                                         |21.84116% ~0 s remaining  
|===========                                         |22.02166% ~0 s remaining  
|===========                                         |22.20217% ~0 s remaining  
|===========                                         |22.38267% ~0 s remaining  
|===========                                         |22.56318% ~0 s remaining  
|===========                                         |22.74368% ~0 s remaining  
|===========                                         |22.92419% ~0 s remaining  
|============                                        |23.10469% ~0 s remaining  
|============                                        |23.2852% ~0 s remaining   
|============                                        |23.4657% ~0 s remaining   
|============                                        |23.64621% ~0 s remaining  
|============                                        |23.82671% ~0 s remaining  
|============                                        |24.00722% ~0 s remaining  
|============                                        |24.18773% ~0 s remaining  
|============                                        |24.36823% ~0 s remaining  
|============                                        |24.54874% ~0 s remaining  
|============                                        |24.72924% ~0 s remaining  
|============                                        |24.90975% ~0 s remaining  
|=============                                       |25.09025% ~0 s remaining  
|=============                                       |25.27076% ~0 s remaining  
|=============                                       |25.45126% ~0 s remaining  
|=============                                       |25.63177% ~0 s remaining  
|=============                                       |25.81227% ~0 s remaining  
|=============                                       |25.99278% ~0 s remaining  
|=============                                       |26.17329% ~0 s remaining  
|=============                                       |26.35379% ~0 s remaining  
|=============                                       |26.5343% ~0 s remaining   
|=============                                       |26.7148% ~0 s remaining   
|=============                                       |26.89531% ~0 s remaining  
|==============                                      |27.07581% ~0 s remaining  
|==============                                      |27.25632% ~0 s remaining  
|==============                                      |27.43682% ~0 s remaining  
|==============                                      |27.61733% ~0 s remaining  
|==============                                      |27.79783% ~0 s remaining  
|==============                                      |27.97834% ~0 s remaining  
|==============                                      |28.15884% ~0 s remaining  
|==============                                      |28.33935% ~0 s remaining  
|==============                                      |28.51986% ~0 s remaining  
|==============                                      |28.70036% ~0 s remaining  
|===============                                     |28.88087% ~0 s remaining  
|===============                                     |29.06137% ~0 s remaining  
|===============                                     |29.24188% ~0 s remaining  
|===============                                     |29.42238% ~0 s remaining  
|===============                                     |29.60289% ~0 s remaining  
|===============                                     |29.78339% ~0 s remaining  
|===============                                     |29.9639% ~0 s remaining   
|===============                                     |30.1444% ~0 s remaining   
|===============                                     |30.32491% ~0 s remaining  
|===============                                     |30.50542% ~0 s remaining  
|===============                                     |30.68592% ~0 s remaining  
|================                                    |30.86643% ~0 s remaining  
|================                                    |31.04693% ~0 s remaining  
|================                                    |31.22744% ~0 s remaining  
|================                                    |31.40794% ~0 s remaining  
|================                                    |31.58845% ~0 s remaining  
|================                                    |31.76895% ~0 s remaining  
|================                                    |31.94946% ~0 s remaining  
|================                                    |32.12996% ~0 s remaining  
|================                                    |32.31047% ~0 s remaining  
|================                                    |32.49097% ~0 s remaining  
|================                                    |32.67148% ~0 s remaining  
|=================                                   |32.85199% ~0 s remaining  
|=================                                   |33.03249% ~0 s remaining  
|=================                                   |33.213% ~0 s remaining    
|=================                                   |33.3935% ~0 s remaining   
|=================                                   |33.57401% ~0 s remaining  
|=================                                   |33.75451% ~0 s remaining  
|=================                                   |33.93502% ~0 s remaining  
|=================                                   |34.11552% ~0 s remaining  
|=================                                   |34.29603% ~0 s remaining  
|=================                                   |34.47653% ~0 s remaining  
|==================                                  |34.65704% ~0 s remaining  
|==================                                  |34.83755% ~0 s remaining  
|==================                                  |35.01805% ~0 s remaining  
|==================                                  |35.19856% ~0 s remaining  
|==================                                  |35.37906% ~0 s remaining  
|==================                                  |35.55957% ~0 s remaining  
|==================                                  |35.74007% ~0 s remaining  
|==================                                  |35.92058% ~0 s remaining  
|==================                                  |36.10108% ~0 s remaining  
|==================                                  |36.28159% ~0 s remaining  
|==================                                  |36.46209% ~0 s remaining  
|===================                                 |36.6426% ~0 s remaining   
|===================                                 |36.8231% ~0 s remaining   
|===================                                 |37.00361% ~0 s remaining  
|===================                                 |37.18412% ~0 s remaining  
|===================                                 |37.36462% ~0 s remaining  
|===================                                 |37.54513% ~0 s remaining  
|===================                                 |37.72563% ~0 s remaining  
|===================                                 |37.90614% ~0 s remaining  
|===================                                 |38.08664% ~0 s remaining  
|===================                                 |38.26715% ~0 s remaining  
|===================                                 |38.44765% ~0 s remaining  
|====================                                |38.62816% ~0 s remaining  
|====================                                |38.80866% ~0 s remaining  
|====================                                |38.98917% ~0 s remaining  
|====================                                |39.16968% ~0 s remaining  
|====================                                |39.35018% ~0 s remaining  
|====================                                |39.53069% ~0 s remaining  
|====================                                |39.71119% ~0 s remaining  
|====================                                |39.8917% ~0 s remaining   
|====================                                |40.0722% ~0 s remaining   
|====================                                |40.25271% ~0 s remaining  
|=====================                               |40.43321% ~0 s remaining  
|=====================                               |40.61372% ~0 s remaining  
|=====================                               |40.79422% ~0 s remaining  
|=====================                               |40.97473% ~0 s remaining  
|=====================                               |41.15523% ~0 s remaining  
|=====================                               |41.33574% ~0 s remaining  
|=====================                               |41.51625% ~0 s remaining  
|=====================                               |41.69675% ~0 s remaining  
|=====================                               |41.87726% ~0 s remaining  
|=====================                               |42.05776% ~0 s remaining  
|=====================                               |42.23827% ~0 s remaining  
|======================                              |42.41877% ~0 s remaining  
|======================                              |42.59928% ~0 s remaining  
|======================                              |42.77978% ~0 s remaining  
|======================                              |42.96029% ~0 s remaining  
|======================                              |43.14079% ~0 s remaining  
|======================                              |43.3213% ~0 s remaining   
|======================                              |43.50181% ~0 s remaining  
|======================                              |43.68231% ~0 s remaining  
|======================                              |43.86282% ~0 s remaining  
|======================                              |44.04332% ~0 s remaining  
|======================                              |44.22383% ~0 s remaining  
|=======================                             |44.40433% ~0 s remaining  
|=======================                             |44.58484% ~0 s remaining  
|=======================                             |44.76534% ~0 s remaining  
|=======================                             |44.94585% ~0 s remaining  
|=======================                             |45.12635% ~0 s remaining  
|=======================                             |45.30686% ~0 s remaining  
|=======================                             |45.48736% ~0 s remaining  
|=======================                             |45.66787% ~0 s remaining  
|=======================                             |45.84838% ~0 s remaining  
|=======================                             |46.02888% ~0 s remaining  
|========================                            |46.20939% ~0 s remaining  
|========================                            |46.38989% ~0 s remaining  
|========================                            |46.5704% ~0 s remaining   
|========================                            |46.7509% ~0 s remaining   
|========================                            |46.93141% ~0 s remaining  
|========================                            |47.11191% ~0 s remaining  
|========================                            |47.29242% ~0 s remaining  
|========================                            |47.47292% ~0 s remaining  
|========================                            |47.65343% ~0 s remaining  
|========================                            |47.83394% ~0 s remaining  
|========================                            |48.01444% ~0 s remaining  
|=========================                           |48.19495% ~0 s remaining  
|=========================                           |48.37545% ~0 s remaining  
|=========================                           |48.55596% ~0 s remaining  
|=========================                           |48.73646% ~0 s remaining  
|=========================                           |48.91697% ~0 s remaining  
|=========================                           |49.09747% ~0 s remaining  
|=========================                           |49.27798% ~0 s remaining  
|=========================                           |49.45848% ~0 s remaining  
|=========================                           |49.63899% ~0 s remaining  
|=========================                           |49.81949% ~0 s remaining  
|==========================                          | 50% ~0 s remaining       
|==========================                          |50.18051% ~0 s remaining  
|==========================                          |50.36101% ~0 s remaining  
|==========================                          |50.54152% ~0 s remaining  
|==========================                          |50.72202% ~0 s remaining  
|==========================                          |50.90253% ~0 s remaining  
|==========================                          |51.08303% ~0 s remaining  
|==========================                          |51.26354% ~0 s remaining  
|==========================                          |51.44404% ~0 s remaining  
|==========================                          |51.62455% ~0 s remaining  
|==========================                          |51.80505% ~0 s remaining  
|===========================                         |51.98556% ~0 s remaining  
|===========================                         |52.16606% ~0 s remaining  
|===========================                         |52.34657% ~0 s remaining  
|===========================                         |52.52708% ~0 s remaining  
|===========================                         |52.70758% ~0 s remaining  
|===========================                         |52.88809% ~0 s remaining  
|===========================                         |53.06859% ~0 s remaining  
|===========================                         |53.2491% ~0 s remaining   
|===========================                         |53.4296% ~0 s remaining   
|===========================                         |53.61011% ~0 s remaining  
|===========================                         |53.79061% ~0 s remaining  
|============================                        |53.97112% ~0 s remaining  
|============================                        |54.15162% ~0 s remaining  
|============================                        |54.33213% ~0 s remaining  
|============================                        |54.51264% ~0 s remaining  
|============================                        |54.69314% ~0 s remaining  
|============================                        |54.87365% ~0 s remaining  
|============================                        |55.05415% ~0 s remaining  
|============================                        |55.23466% ~0 s remaining  
|============================                        |55.41516% ~0 s remaining  
|============================                        |55.59567% ~0 s remaining  
|=============================                       |55.77617% ~0 s remaining  
|=============================                       |55.95668% ~0 s remaining  
|=============================                       |56.13718% ~0 s remaining  
|=============================                       |56.31769% ~0 s remaining  
|=============================                       |56.49819% ~0 s remaining  
|=============================                       |56.6787% ~0 s remaining   
|=============================                       |56.85921% ~0 s remaining  
|=============================                       |57.03971% ~0 s remaining  
|=============================                       |57.22022% ~0 s remaining  
|=============================                       |57.40072% ~0 s remaining  
|=============================                       |57.58123% ~0 s remaining  
|==============================                      |57.76173% ~0 s remaining  
|==============================                      |57.94224% ~0 s remaining  
|==============================                      |58.12274% ~0 s remaining  
|==============================                      |58.30325% ~0 s remaining  
|==============================                      |58.48375% ~0 s remaining  
|==============================                      |58.66426% ~0 s remaining  
|==============================                      |58.84477% ~0 s remaining  
|==============================                      |59.02527% ~0 s remaining  
|==============================                      |59.20578% ~0 s remaining  
|==============================                      |59.38628% ~0 s remaining  
|==============================                      |59.56679% ~0 s remaining  
|===============================                     |59.74729% ~0 s remaining  
|===============================                     |59.9278% ~0 s remaining   
|===============================                     |60.1083% ~0 s remaining   
|===============================                     |60.28881% ~0 s remaining  
|===============================                     |60.46931% ~0 s remaining  
|===============================                     |60.64982% ~0 s remaining  
|===============================                     |60.83032% ~0 s remaining  
|===============================                     |61.01083% ~0 s remaining  
|===============================                     |61.19134% ~0 s remaining  
|===============================                     |61.37184% ~0 s remaining  
|================================                    |61.55235% ~0 s remaining  
|================================                    |61.73285% ~0 s remaining  
|================================                    |61.91336% ~0 s remaining  
|================================                    |62.09386% ~0 s remaining  
|================================                    |62.27437% ~0 s remaining  
|================================                    |62.45487% ~0 s remaining  
|================================                    |62.63538% ~0 s remaining  
|================================                    |62.81588% ~0 s remaining  
|================================                    |62.99639% ~0 s remaining  
|================================                    |63.1769% ~0 s remaining   
|================================                    |63.3574% ~0 s remaining   
|=================================                   |63.53791% ~0 s remaining  
|=================================                   |63.71841% ~0 s remaining  
|=================================                   |63.89892% ~0 s remaining  
|=================================                   |64.07942% ~0 s remaining  
|=================================                   |64.25993% ~0 s remaining  
|=================================                   |64.44043% ~0 s remaining  
|=================================                   |64.62094% ~0 s remaining  
|=================================                   |64.80144% ~0 s remaining  
|=================================                   |64.98195% ~0 s remaining  
|=================================                   |65.16245% ~0 s remaining  
|=================================                   |65.34296% ~0 s remaining  
|==================================                  |65.52347% ~0 s remaining  
|==================================                  |65.70397% ~0 s remaining  
|==================================                  |65.88448% ~0 s remaining  
|==================================                  |66.06498% ~0 s remaining  
|==================================                  |66.24549% ~0 s remaining  
|==================================                  |66.42599% ~0 s remaining  
|==================================                  |66.6065% ~0 s remaining   
|==================================                  |66.787% ~0 s remaining    
|==================================                  |66.96751% ~0 s remaining  
|==================================                  |67.14801% ~0 s remaining  
|===================================                 |67.32852% ~0 s remaining  
|===================================                 |67.50903% ~0 s remaining  
|===================================                 |67.68953% ~0 s remaining  
|===================================                 |67.87004% ~0 s remaining  
|===================================                 |68.05054% ~0 s remaining  
|===================================                 |68.23105% ~0 s remaining  
|===================================                 |68.41155% ~0 s remaining  
|===================================                 |68.59206% ~0 s remaining  
|===================================                 |68.77256% ~0 s remaining  
|===================================                 |68.95307% ~0 s remaining  
|===================================                 |69.13357% ~0 s remaining  
|====================================                |69.31408% ~0 s remaining  
|====================================                |69.49458% ~0 s remaining  
|====================================                |69.67509% ~0 s remaining  
|====================================                |69.8556% ~0 s remaining   
|====================================                |70.0361% ~0 s remaining   
|====================================                |70.21661% ~0 s remaining  
|====================================                |70.39711% ~0 s remaining  
|====================================                |70.57762% ~0 s remaining  
|====================================                |70.75812% ~0 s remaining  
|====================================                |70.93863% ~0 s remaining  
|====================================                |71.11913% ~0 s remaining  
|=====================================               |71.29964% ~0 s remaining  
|=====================================               |71.48014% ~0 s remaining  
|=====================================               |71.66065% ~0 s remaining  
|=====================================               |71.84116% ~0 s remaining  
|=====================================               |72.02166% ~0 s remaining  
|=====================================               |72.20217% ~0 s remaining  
|=====================================               |72.38267% ~0 s remaining  
|=====================================               |72.56318% ~0 s remaining  
|=====================================               |72.74368% ~0 s remaining  
|=====================================               |72.92419% ~0 s remaining  
|======================================              |73.10469% ~0 s remaining  
|======================================              |73.2852% ~0 s remaining   
|======================================              |73.4657% ~0 s remaining   
|======================================              |73.64621% ~0 s remaining  
|======================================              |73.82671% ~0 s remaining  
|======================================              |74.00722% ~0 s remaining  
|======================================              |74.18773% ~0 s remaining  
|======================================              |74.36823% ~0 s remaining  
|======================================              |74.54874% ~0 s remaining  
|======================================              |74.72924% ~0 s remaining  
|======================================              |74.90975% ~0 s remaining  
|=======================================             |75.09025% ~0 s remaining  
|=======================================             |75.27076% ~0 s remaining  
|=======================================             |75.45126% ~0 s remaining  
|=======================================             |75.63177% ~0 s remaining  
|=======================================             |75.81227% ~0 s remaining  
|=======================================             |75.99278% ~0 s remaining  
|=======================================             |76.17329% ~0 s remaining  
|=======================================             |76.35379% ~0 s remaining  
|=======================================             |76.5343% ~0 s remaining   
|=======================================             |76.7148% ~0 s remaining   
|=======================================             |76.89531% ~0 s remaining  
|========================================            |77.07581% ~0 s remaining  
|========================================            |77.25632% ~0 s remaining  
|========================================            |77.43682% ~0 s remaining  
|========================================            |77.61733% ~0 s remaining  
|========================================            |77.79783% ~0 s remaining  
|========================================            |77.97834% ~0 s remaining  
|========================================            |78.15884% ~0 s remaining  
|========================================            |78.33935% ~0 s remaining  
|========================================            |78.51986% ~0 s remaining  
|========================================            |78.70036% ~0 s remaining  
|=========================================           |78.88087% ~0 s remaining  
|=========================================           |79.06137% ~0 s remaining  
|=========================================           |79.24188% ~0 s remaining  
|=========================================           |79.42238% ~0 s remaining  
|=========================================           |79.60289% ~0 s remaining  
|=========================================           |79.78339% ~0 s remaining  
|=========================================           |79.9639% ~0 s remaining   
|=========================================           |80.1444% ~0 s remaining   
|=========================================           |80.32491% ~0 s remaining  
|=========================================           |80.50542% ~0 s remaining  
|=========================================           |80.68592% ~0 s remaining  
|==========================================          |80.86643% ~0 s remaining  
|==========================================          |81.04693% ~0 s remaining  
|==========================================          |81.22744% ~0 s remaining  
|==========================================          |81.40794% ~0 s remaining  
|==========================================          |81.58845% ~0 s remaining  
|==========================================          |81.76895% ~0 s remaining  
|==========================================          |81.94946% ~0 s remaining  
|==========================================          |82.12996% ~0 s remaining  
|==========================================          |82.31047% ~0 s remaining  
|==========================================          |82.49097% ~0 s remaining  
|==========================================          |82.67148% ~0 s remaining  
|===========================================         |82.85199% ~0 s remaining  
|===========================================         |83.03249% ~0 s remaining  
|===========================================         |83.213% ~0 s remaining    
|===========================================         |83.3935% ~0 s remaining   
|===========================================         |83.57401% ~0 s remaining  
|===========================================         |83.75451% ~0 s remaining  
|===========================================         |83.93502% ~0 s remaining  
|===========================================         |84.11552% ~0 s remaining  
|===========================================         |84.29603% ~0 s remaining  
|===========================================         |84.47653% ~0 s remaining  
|============================================        |84.65704% ~0 s remaining  
|============================================        |84.83755% ~0 s remaining  
|============================================        |85.01805% ~0 s remaining  
|============================================        |85.19856% ~0 s remaining  
|============================================        |85.37906% ~0 s remaining  
|============================================        |85.55957% ~0 s remaining  
|============================================        |85.74007% ~0 s remaining  
|============================================        |85.92058% ~0 s remaining  
|============================================        |86.10108% ~0 s remaining  
|============================================        |86.28159% ~0 s remaining  
|============================================        |86.46209% ~0 s remaining  
|=============================================       |86.6426% ~0 s remaining   
|=============================================       |86.8231% ~0 s remaining   
|=============================================       |87.00361% ~0 s remaining  
|=============================================       |87.18412% ~0 s remaining  
|=============================================       |87.36462% ~0 s remaining  
|=============================================       |87.54513% ~0 s remaining  
|=============================================       |87.72563% ~0 s remaining  
|=============================================       |87.90614% ~0 s remaining  
|=============================================       |88.08664% ~0 s remaining  
|=============================================       |88.26715% ~0 s remaining  
|=============================================       |88.44765% ~0 s remaining  
|==============================================      |88.62816% ~0 s remaining  
|==============================================      |88.80866% ~0 s remaining  
|==============================================      |88.98917% ~0 s remaining  
|==============================================      |89.16968% ~0 s remaining  
|==============================================      |89.35018% ~0 s remaining  
|==============================================      |89.53069% ~0 s remaining  
|==============================================      |89.71119% ~0 s remaining  
|==============================================      |89.8917% ~0 s remaining   
|==============================================      |90.0722% ~0 s remaining   
|==============================================      |90.25271% ~0 s remaining  
|===============================================     |90.43321% ~0 s remaining  
|===============================================     |90.61372% ~0 s remaining  
|===============================================     |90.79422% ~0 s remaining  
|===============================================     |90.97473% ~0 s remaining  
|===============================================     |91.15523% ~0 s remaining  
|===============================================     |91.33574% ~0 s remaining  
|===============================================     |91.51625% ~0 s remaining  
|===============================================     |91.69675% ~0 s remaining  
|===============================================     |91.87726% ~0 s remaining  
|===============================================     |92.05776% ~0 s remaining  
|===============================================     |92.23827% ~0 s remaining  
|================================================    |92.41877% ~0 s remaining  
|================================================    |92.59928% ~0 s remaining  
|================================================    |92.77978% ~0 s remaining  
|================================================    |92.96029% ~0 s remaining  
|================================================    |93.14079% ~0 s remaining  
|================================================    |93.3213% ~0 s remaining   
|================================================    |93.50181% ~0 s remaining  
|================================================    |93.68231% ~0 s remaining  
|================================================    |93.86282% ~0 s remaining  
|================================================    |94.04332% ~0 s remaining  
|================================================    |94.22383% ~0 s remaining  
|=================================================   |94.40433% ~0 s remaining  
|=================================================   |94.58484% ~0 s remaining  
|=================================================   |94.76534% ~0 s remaining  
|=================================================   |94.94585% ~0 s remaining  
|=================================================   |95.12635% ~0 s remaining  
|=================================================   |95.30686% ~0 s remaining  
|=================================================   |95.48736% ~0 s remaining  
|=================================================   |95.66787% ~0 s remaining  
|=================================================   |95.84838% ~0 s remaining  
|=================================================   |96.02888% ~0 s remaining  
|==================================================  |96.20939% ~0 s remaining  
|==================================================  |96.38989% ~0 s remaining  
|==================================================  |96.5704% ~0 s remaining   
|==================================================  |96.7509% ~0 s remaining   
|==================================================  |96.93141% ~0 s remaining  
|==================================================  |97.11191% ~0 s remaining  
|==================================================  |97.29242% ~0 s remaining  
|==================================================  |97.47292% ~0 s remaining  
|==================================================  |97.65343% ~0 s remaining  
|==================================================  |97.83394% ~0 s remaining  
|==================================================  |98.01444% ~0 s remaining  
|=================================================== |98.19495% ~0 s remaining  
|=================================================== |98.37545% ~0 s remaining  
|=================================================== |98.55596% ~0 s remaining  
|=================================================== |98.73646% ~0 s remaining  
|=================================================== |98.91697% ~0 s remaining  
|=================================================== |99.09747% ~0 s remaining  
|=================================================== |99.27798% ~0 s remaining  
|=================================================== |99.45848% ~0 s remaining  
|=================================================== |99.63899% ~0 s remaining  
|=================================================== |99.81949% ~0 s remaining  
|====================================================|100% ~0 s remaining       
|====================================================|100%                      Completed after 0 s 
                   Status freq
1 Regions below threshold    1
2 Regions above threshold    1
                   Status freq
1 Regions below threshold    1
2 Regions above threshold    1
                   Status freq
1 Regions below threshold    1
2 Regions above threshold    1

|                                                    |  0%                      
|==========================                          | 50% ~0 s remaining       
|====================================================|100% ~0 s remaining       
|====================================================|100%                      Completed after 0 s 
                 Status freq
1 Genes above threshold    1
2                  <NA>    1

|                                                    |  0%                      
|=================                                   |33.33333% ~0 s remaining  
|==================================                  |66.66667% ~0 s remaining  
|====================================================|100% ~0 s remaining       
|====================================================|100%                      Completed after 0 s 

|                                                    |  0%                      
|==========================                          | 50% ~0 s remaining       
|====================================================|100% ~0 s remaining       
|====================================================|100%                      Completed after 0 s 

|                                                    |  0%                      
|=================                                   |33.33333% ~0 s remaining  
|==================================                  |66.66667% ~0 s remaining  
|====================================================|100% ~0 s remaining       
|====================================================|100%                      Completed after 0 s 

|                                                    |  0%                      
|=====                                               |11.11111% ~0 s remaining  
|===========                                         |22.22222% ~0 s remaining  
|=================                                   |33.33333% ~0 s remaining  
|=======================                             |44.44444% ~0 s remaining  
|============================                        |55.55556% ~0 s remaining  
|==================================                  |66.66667% ~0 s remaining  
|========================================            |77.77778% ~0 s remaining  
|==============================================      |88.88889% ~0 s remaining  
|====================================================|100% ~0 s remaining       
|====================================================|100%                      Completed after 0 s 

|                                                    |  0%                      
|====================================================|100% ~0 s remaining       
|====================================================|100%                      Completed after 0 s 

|                                                    |  0%                      
|====================================================|100% ~0 s remaining       
|====================================================|100%                      Completed after 0 s 

|                                                    |  0%                      
|====================================================|100% ~0 s remaining       
|====================================================|100%                      Completed after 0 s 

|                                                    |  0%                      
|====================================================|100% ~0 s remaining       
|====================================================|100%                      Completed after 0 s 
[ FAIL 0 | WARN 1 | SKIP 10 | PASS 152 ]

══ Skipped tests ═══════════════════════════════════════════════════════════════
• On Bioconductor (6)
• On CRAN (2)
• empty test (2)

[ FAIL 0 | WARN 1 | SKIP 10 | PASS 152 ]
> 
> proc.time()
   user  system elapsed 
  79.43    5.51   91.18 

Example timings

MethReg.Rcheck/MethReg-Ex.timings

nameusersystemelapsed
cor_dnam_target_gene0.110.000.11
cor_tf_target_gene0.040.020.06
create_triplet_distance_based26.39 2.8665.09
create_triplet_regulon_based20.81 0.9721.85
filter_dnam_by_quant_diff0.080.000.10
filter_exp_by_quant_mean_FC1.040.011.06
get_human_tfs0.420.050.74
get_met_probes_info0.020.000.01
get_promoter_avg000
get_region_target_gene2.890.032.94
get_residuals0.040.000.05
get_tf_ES1.750.122.14
get_tf_in_region18.91 0.8219.72
interaction_model0.270.000.27
make_dnam_se0.040.000.04
make_exp_se0.060.000.06
make_granges_from_names000
make_names_from_granges0.020.000.02
plot_interaction_model1.420.011.50
stratified_model0.120.000.12