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This page was generated on 2022-06-24 12:04:58 -0400 (Fri, 24 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4380
palomino3Windows Server 2022 Datacenterx644.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics" 4156
merida1macOS 10.14.6 Mojavex86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4221
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for MACPET on nebbiolo1


To the developers/maintainers of the MACPET package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MACPET.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1056/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MACPET 1.16.0  (landing page)
Ioannis Vardaxis
Snapshot Date: 2022-06-23 13:55:15 -0400 (Thu, 23 Jun 2022)
git_url: https://git.bioconductor.org/packages/MACPET
git_branch: RELEASE_3_15
git_last_commit: 61832fb
git_last_commit_date: 2022-04-26 11:47:25 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  ERROR    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: MACPET
Version: 1.16.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL MACPET
StartedAt: 2022-06-23 15:33:13 -0400 (Thu, 23 Jun 2022)
EndedAt: 2022-06-23 15:33:27 -0400 (Thu, 23 Jun 2022)
EllapsedTime: 13.9 seconds
RetCode: 1
Status:   ERROR  

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL MACPET
###
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* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘MACPET’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.15-bioc/R/library/bigmemory/include' -I'/home/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.15-bioc/R/library/bigmemory/include' -I'/home/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c Stage_0_FastqFilteringSubFunctions.cpp -o Stage_0_FastqFilteringSubFunctions.o
Stage_0_FastqFilteringSubFunctions.cpp: In function ‘SEXPREC* FilterFastqYield_fun_Rcpp(int&, std::vector<std::__cxx11::basic_string<char> >&, Rcpp::NumericVector&, std::vector<std::__cxx11::basic_string<char> >&, Rcpp::NumericVector&, std::string&, std::string&, int&, int&, int&)’:
Stage_0_FastqFilteringSubFunctions.cpp:55:36: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   55 |         if(SreadFastq1[i].find(NNs)!=-1||SreadFastq2[i].find(NNs)!=-1){
      |            ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
Stage_0_FastqFilteringSubFunctions.cpp:55:66: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   55 |         if(SreadFastq1[i].find(NNs)!=-1||SreadFastq2[i].find(NNs)!=-1){
      |                                          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.15-bioc/R/library/bigmemory/include' -I'/home/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c Stage_3_PeakFinderSubFunctions.cpp -o Stage_3_PeakFinderSubFunctions.o
Stage_3_PeakFinderSubFunctions.cpp: In function ‘void Mstep2D_Rcpp(Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, const int&, const int&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericMatrix&, const NumericMatrix&)’:
Stage_3_PeakFinderSubFunctions.cpp:1146:76: error: ‘DOUBLE_EPS’ was not declared in this scope
 1146 |             double Ak_g=1.0/std::max(1.0-B_my_g[g-1]/C_my_g[g-1],std::sqrt(DOUBLE_EPS));
      |                                                                            ^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp: In function ‘void NR_lambdax_g_Rcpp(double&, const double&, const double&, const double&)’:
Stage_3_PeakFinderSubFunctions.cpp:1217:45: error: ‘DOUBLE_EPS’ was not declared in this scope
 1217 |         if(lambdax>=0.0) lambdax=-std::sqrt(DOUBLE_EPS);
      |                                             ^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp:1218:50: error: ‘DOUBLE_EPS’ was not declared in this scope
 1218 |         if(lambdax<=-1.0) lambdax=-1.0+std::sqrt(DOUBLE_EPS);
      |                                                  ^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp: In function ‘void NR_lambday_g_Rcpp(double&, const double&, const double&, const double&)’:
Stage_3_PeakFinderSubFunctions.cpp:1257:48: error: ‘DOUBLE_EPS’ was not declared in this scope
 1257 |         if(lambday>=1.0) lambday=1.0-std::sqrt(DOUBLE_EPS);
      |                                                ^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp:1258:44: error: ‘DOUBLE_EPS’ was not declared in this scope
 1258 |         if(lambday<=0.0) lambday=std::sqrt(DOUBLE_EPS);
      |                                            ^~~~~~~~~~
make: *** [/home/biocbuild/bbs-3.15-bioc/R/etc/Makeconf:175: Stage_3_PeakFinderSubFunctions.o] Error 1
ERROR: compilation failed for package ‘MACPET’
* removing ‘/home/biocbuild/bbs-3.15-bioc/R/library/MACPET’