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This page was generated on 2022-03-02 11:07:11 -0500 (Wed, 02 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4332
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4093
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4068
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4143
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for DeepBlueR on riesling1


To the developers/maintainers of the DeepBlueR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DeepBlueR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 475/2088HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DeepBlueR 1.21.0  (landing page)
Felipe Albrecht , Markus List
Snapshot Date: 2022-03-01 13:55:23 -0500 (Tue, 01 Mar 2022)
git_url: https://git.bioconductor.org/packages/DeepBlueR
git_branch: master
git_last_commit: 340e089
git_last_commit_date: 2021-10-26 12:28:59 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: DeepBlueR
Version: 1.21.0
Command: rm -rf DeepBlueR.buildbin-libdir && mkdir DeepBlueR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=DeepBlueR.buildbin-libdir DeepBlueR_1.21.0.tar.gz
StartedAt: 2022-03-01 21:11:05 -0500 (Tue, 01 Mar 2022)
EndedAt: 2022-03-01 21:12:25 -0500 (Tue, 01 Mar 2022)
EllapsedTime: 79.8 seconds
RetCode: 0
Status:   OK  
PackageFile: DeepBlueR_1.21.0.zip
PackageFileSize: 1.456 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf DeepBlueR.buildbin-libdir && mkdir DeepBlueR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=DeepBlueR.buildbin-libdir DeepBlueR_1.21.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'DeepBlueR' ...
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
Called method: deepblue_list_column_types
Reported status was: okay
Called method: deepblue_info
Reported status was: okay
** help
*** installing help indices
  converting help for package 'DeepBlueR'
    finding HTML links ... done
    DeepBlueCommand-class                   html  
    deepblue_aggregate                      html  
    deepblue_batch_export_results           html  
    deepblue_binning                        html  
    deepblue_cache_status                   html  
    deepblue_cancel_request                 html  
    deepblue_chromosomes                    html  
    deepblue_clear_cache                    html  
    deepblue_collection_experiments_count   html  
    deepblue_column_types                   html  
    deepblue_commands                       html  
    deepblue_convert_to_df                  html  
    deepblue_convert_to_grange              html  
    deepblue_count_gene_ontology_terms      html  
    deepblue_count_regions                  html  
    deepblue_coverage                       html  
    deepblue_delete_request_from_cache      html  
    deepblue_diff                           html  
    deepblue_distinct_column_values         html  
    deepblue_download_request_data-DeepBlueCommand-method
                                            html  
    deepblue_download_request_data          html  
    deepblue_echo                           html  
    deepblue_enrich_regions_fast            html  
    deepblue_enrich_regions_go_terms        html  
    deepblue_enrich_regions_overlap         html  
    deepblue_export_bed                     html  
    deepblue_export_meta_data               html  
    deepblue_export_tab                     html  
    deepblue_extend                         html  
    deepblue_extract_ids                    html  
    deepblue_extract_names                  html  
    deepblue_faceting_experiments           html  
    deepblue_filter_regions                 html  
    deepblue_find_motif                     html  
    deepblue_flank                          html  
    deepblue_format_object_size             html  
    deepblue_get_biosource_children         html  
    deepblue_get_biosource_parents          html  
    deepblue_get_biosource_related          html  
    deepblue_get_biosource_synonyms         html  
    deepblue_get_db                         html  
    deepblue_get_experiments_by_query       html  
    deepblue_get_regions                    html  
    deepblue_get_request_data               html  
    deepblue_info                           html  
    deepblue_input_regions                  html  
    deepblue_intersection                   html  
    deepblue_is_biosource                   html  
    deepblue_liftover                       html  
    deepblue_list_annotations               html  
    deepblue_list_biosources                html  
    deepblue_list_cached_requests           html  
    deepblue_list_column_types              html  
    deepblue_list_epigenetic_marks          html  
    deepblue_list_experiments               html  
    deepblue_list_expressions               html  
    deepblue_list_gene_models               html  
    deepblue_list_genes                     html  
    deepblue_list_genomes                   html  
    deepblue_list_in_use                    html  
    deepblue_list_projects                  html  
    deepblue_list_recent_experiments        html  
    deepblue_list_requests                  html  
    deepblue_list_samples                   html  
    deepblue_list_similar_biosources        html  
    deepblue_list_similar_epigenetic_marks
                                            html  
    deepblue_list_similar_experiments       html  
    deepblue_list_similar_genomes           html  
    deepblue_list_similar_projects          html  
    deepblue_list_similar_techniques        html  
    deepblue_list_techniques                html  
    deepblue_merge_queries                  html  
    deepblue_meta_data_to_table             html  
    deepblue_name_to_id                     html  
    deepblue_options                        html  
    deepblue_overlap                        html  
    deepblue_parse_gtf                      html  
    deepblue_preview_experiment             html  
    deepblue_query_cache                    html  
    deepblue_query_experiment_type          html  
    deepblue_reset_options                  html  
    deepblue_score_matrix                   html  
    deepblue_search                         html  
    deepblue_select_annotations             html  
    deepblue_select_column                  html  
    deepblue_select_experiments             html  
    deepblue_select_expressions             html  
    deepblue_select_genes                   html  
    deepblue_select_regions                 html  
    deepblue_switch_get_request_data        html  
    deepblue_tiling_regions                 html  
    deepblue_wait_request                   html  
    show-DeepBlueCommand-method             html  
    xml.rpc                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'DeepBlueR' as DeepBlueR_1.21.0.zip
* DONE (DeepBlueR)