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This page was generated on 2022-03-18 11:07:20 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for DeepBlueR on riesling1


To the developers/maintainers of the DeepBlueR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DeepBlueR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 475/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DeepBlueR 1.21.0  (landing page)
Felipe Albrecht , Markus List
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/DeepBlueR
git_branch: master
git_last_commit: 340e089
git_last_commit_date: 2021-10-26 12:28:59 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
riesling1Windows Server 2019 Standard / x64  OK    ERROR  skippedskipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: DeepBlueR
Version: 1.21.0
Command: chmod a+r DeepBlueR -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DeepBlueR
StartedAt: 2022-03-17 16:42:44 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 16:44:00 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 75.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r DeepBlueR -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DeepBlueR
###
##############################################################################
##############################################################################


* checking for file 'DeepBlueR/DESCRIPTION' ... OK
* preparing 'DeepBlueR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'DeepBlueR.Rmd' using rmarkdown
Loading required package: XML
Loading required package: RCurl
Welcome to the DeepBlueR package
DeepBlue is online
Called method: deepblue_search
Reported status was: okay
Warning in deepblue_search(keyword = "'H3k27AC' 'blood' 'peak'", type = "experiments") :
  NAs introduced by coercion
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Warning in rpc.serialize(x) : Skipping names on vector!
Called method: deepblue_info
Reported status was: okay
Called method: deepblue_list_experiments
Reported status was: okay
Called method: deepblue_info
Reported status was: okay
Called method: deepblue_select_experiments
Reported status was: okay
Called method: deepblue_count_regions
Reported status was: okay
Called method: deepblue_info
Reported status was: okay
fetching data
Called method: deepblue_info
Reported status was: okay
Called method: deepblue_get_request_data
Reported status was: okay
Called method: deepblue_select_experiments
Reported status was: okay
Called method: deepblue_get_regions
Reported status was: okay
Quitting from lines 256-267 (DeepBlueR.Rmd) 
Error: processing vignette 'DeepBlueR.Rmd' failed with diagnostics:
read failed
--- failed re-building 'DeepBlueR.Rmd'

Warning in file.remove(f) :
  cannot remove file 'DeepBlueR.cache', reason 'Permission denied'
SUMMARY: processing the following file failed:
  'DeepBlueR.Rmd'

Error: Vignette re-building failed.
Execution halted