Back to Multiple platform build/check report for BioC 3.15
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-03-18 11:07:11 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for ChromSCape on riesling1


To the developers/maintainers of the ChromSCape package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChromSCape.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 311/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChromSCape 1.5.32  (landing page)
Pacome Prompsy
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/ChromSCape
git_branch: master
git_last_commit: 9e9621c
git_last_commit_date: 2022-03-16 11:26:08 -0400 (Wed, 16 Mar 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
riesling1Windows Server 2019 Standard / x64  OK    ERROR  skippedskipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: ChromSCape
Version: 1.5.32
Command: chmod a+r ChromSCape -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ChromSCape
StartedAt: 2022-03-17 16:34:53 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 16:36:32 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 98.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r ChromSCape -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ChromSCape
###
##############################################################################
##############################################################################


* checking for file 'ChromSCape/DESCRIPTION' ... OK
* preparing 'ChromSCape':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'PairedTag_Zhu_H3K4me1.Rmd' using rmarkdown
Quitting from lines 75-79 (PairedTag_Zhu_H3K4me1.Rmd) 
Error: processing vignette 'PairedTag_Zhu_H3K4me1.Rmd' failed with diagnostics:
Failed to open /media/pprompsy/Depic_bioinfo_1/InstitutCurie/Documents/Data/ChromSCape_Data/ChromSCape_1.5.22/ChromSCape_analyses//GSE152020_PairedTag_Zhu_2021_H3K4me1/Filtering_Normalize_Reduce/GSE152020_PairedTag_Zhu_2021_H3K4me1_500_200000_99_uncorrected.qs. Check file path.
--- failed re-building 'PairedTag_Zhu_H3K4me1.Rmd'

--- re-building 'vignette.Rmd' using rmarkdown
--- finished re-building 'vignette.Rmd'

SUMMARY: processing the following file failed:
  'PairedTag_Zhu_H3K4me1.Rmd'

Error: Vignette re-building failed.
Execution halted