Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-03-18 11:07:09 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for CellTrails on riesling1


To the developers/maintainers of the CellTrails package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellTrails.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 273/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellTrails 1.13.1  (landing page)
Daniel Ellwanger
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/CellTrails
git_branch: master
git_last_commit: afdce39
git_last_commit_date: 2021-11-20 23:20:47 -0400 (Sat, 20 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CellTrails
Version: 1.13.1
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL CellTrails
StartedAt: 2022-03-17 15:44:53 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 15:46:28 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 94.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL CellTrails
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'CellTrails' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CellTrails'
    finding HTML links ... done
    addTrail                                html  
    connectStates                           html  
    contrastTrailExpr                       html  
    dot-adjustLayoutByPtime                 html  
    dot-bhtsne                              html  
    dot-capitalize                          html  
    dot-color_hue                           html  
    dot-color_ramp                          html  
    dot-connectStates_def                   html  
    dot-connect_ordi                        html  
    dot-connect_ortho                       html  
    dot-contrastExprTrail_def               html  
    dot-deleteMedianCentres                 html  
    dot-denoiseExpression                   html  
    dot-diffExpr                            html  
    dot-diffExprState_def                   html  
    dot-embedSamples_def                    html  
    dot-exprs                               html  
    dot-featureNameExists                   html  
    dot-filterTrajFeaturesByCOV_def         html  
    dot-filterTrajFeaturesByDL_def          html  
    dot-filterTrajFeaturesByFF_def          html  
    dot-findSpectrum_def                    html  
    dot-findStates_def                      html  
    dot-fitDynamic_def                      html  
    dot-fitTrajectory_def                   html  
    dot-fit_surface                         html  
    dot-fr_layout                           html  
    dot-generate_ordination                 html  
    dot-ihs                                 html  
    dot-linear_fit                          html  
    dot-needsToBeExpanded                   html  
    dot-nn_impute                           html  
    dot-pca_def                             html  
    dot-pheno                               html  
    dot-phenoNameExists                     html  
    dot-plotDynamic                         html  
    dot-plotManifold_def                    html  
    dot-plotSpectrum_def                    html  
    dot-plotStateExpression_def             html  
    dot-plotStateSize_def                   html  
    dot-plotStateTrajectory_def             html  
    dot-plotTrail_def                       html  
    dot-plotTrailblazing_def                html  
    dot-plot_trajectoryFit                  html  
    dot-prettyColorRamp                     html  
    dot-prettyString                        html  
    dot-project_ortho                       html  
    dot-rbf                                 html  
    dot-rescale                             html  
    dot-sampleNameExists                    html  
    dot-spanForest-set                      html  
    dot-spanForest                          html  
    dot-spatmed                             html  
    dot-stateTrajLayout                     html  
    dot-trailNameExists                     html  
    dot-trajGraph-set                       html  
    dot-trajGraph                           html  
    dot-trajLandmark-set                    html  
    dot-trajLandmark                        html  
    dot-trajResiduals-set                   html  
    dot-useFeature-set                      html  
    dot-useFeature                          html  
    dot-useSample-set                       html  
    dot-useSample                           html  
    dot-validatePlotParams                  html  
    dot-write_ygraphml_def                  html  
    embedSamples                            html  
    enrichment.test                         html  
    exSCE                                   html  
    featureNames-SingleCellExperiment-method
                                            html  
    filterTrajFeaturesByCOV                 html  
    filterTrajFeaturesByDL                  html  
    filterTrajFeaturesByFF                  html  
    findSpectrum                            html  
    findStates                              html  
    fitDynamic                              html  
    fitTrajectory                           html  
    landmarks                               html  
    latentSpace-set                         html  
    latentSpace                             html  
    manifold2D-set                          html  
    manifold2D                              html  
    pca                                     html  
    phenoNames                              html  
    plotDynamic                             html  
    plotManifold                            html  
    plotMap                                 html  
    plotStateExpression                     html  
    plotStateSize                           html  
    plotStateTrajectory                     html  
    plotTrail                               html  
    plotTrajectoryFit                       html  
    read.ygraphml                           html  
    removeTrail                             html  
    sampleNames-SingleCellExperiment-method
                                            html  
    selectTrajectory                        html  
    showTrajInfo                            html  
    simulate_exprs                          html  
    stateTrajLayout-set                     html  
    states-set                              html  
    states                                  html  
    trailNames-set                          html  
    trailNames                              html  
    trails                                  html  
    trajComponents                          html  
    trajFeatureNames-set                    html  
    trajFeatureNames                        html  
    trajLayout-set                          html  
    trajLayout                              html  
    trajResiduals                           html  
    trajSampleNames                         html  
    userLandmarks-set                       html  
    userLandmarks                           html  
    write.ygraphml                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CellTrails)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'customCMPdb' is missing or broken
 done