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This page was generated on 2022-01-17 13:08:02 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for multtest on machv2


To the developers/maintainers of the multtest package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/multtest.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1250/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
multtest 2.50.0  (landing page)
Katherine S. Pollard
Snapshot Date: 2022-01-16 01:55:05 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/multtest
git_branch: RELEASE_3_14
git_last_commit: 1de9664
git_last_commit_date: 2021-10-26 11:45:35 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: multtest
Version: 2.50.0
Command: rm -rf multtest.buildbin-libdir && mkdir multtest.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh multtest_2.50.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R multtest.buildbin-libdir
StartedAt: 2022-01-16 20:41:03 -0500 (Sun, 16 Jan 2022)
EndedAt: 2022-01-16 20:41:29 -0500 (Sun, 16 Jan 2022)
EllapsedTime: 26.5 seconds
RetCode: 0
Status:   OK  
PackageFile: multtest_2.50.0.tgz
PackageFileSize: 835.6 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf multtest.buildbin-libdir && mkdir multtest.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh multtest_2.50.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R multtest.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=multtest.buildbin-libdir multtest_2.50.0.tar.gz'
>>>>>>> 

* installing *source* package ‘multtest’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fPIC  -Wall -g -O2  -c Rpack.c -o Rpack.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fPIC  -Wall -g -O2  -c VScount.c -o VScount.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fPIC  -Wall -g -O2  -c block_sampling_fixed.c -o block_sampling_fixed.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fPIC  -Wall -g -O2  -c bootloop.c -o bootloop.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fPIC  -Wall -g -O2  -c mt.c -o mt.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fPIC  -Wall -g -O2  -c pairt_sampling.c -o pairt_sampling.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fPIC  -Wall -g -O2  -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fPIC  -Wall -g -O2  -c random.c -o random.o
random.c:48:6: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value]
  z1=abs(seed); /*setting the seed to z1 and initialize it*/
     ^
random.c:48:6: note: use function 'labs' instead
  z1=abs(seed); /*setting the seed to z1 and initialize it*/
     ^~~
     labs
1 warning generated.
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fPIC  -Wall -g -O2  -c sampling.c -o sampling.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fPIC  -Wall -g -O2  -c sampling_fixed.c -o sampling_fixed.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fPIC  -Wall -g -O2  -c stat_func.c -o stat_func.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fPIC  -Wall -g -O2  -c stat_order.c -o stat_order.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o multtest.so Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/multtest.buildbin-libdir/00LOCK-multtest/00new/multtest/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (multtest)


>>>>>>> 
>>>>>>> FIXING LINKS FOR multtest.buildbin-libdir/multtest/libs/multtest.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "multtest.buildbin-libdir/multtest/libs/multtest.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "multtest.buildbin-libdir/multtest/libs/multtest.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "multtest.buildbin-libdir/multtest/libs/multtest.so"