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This page was generated on 2022-04-13 12:06:29 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for EBcoexpress on tokay2


To the developers/maintainers of the EBcoexpress package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EBcoexpress.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 558/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EBcoexpress 1.38.0  (landing page)
John A. Dawson
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/EBcoexpress
git_branch: RELEASE_3_14
git_last_commit: b5bb5f1
git_last_commit_date: 2021-10-26 12:02:56 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: EBcoexpress
Version: 1.38.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/EBcoexpress_1.38.0.tar.gz && rm -rf EBcoexpress.buildbin-libdir && mkdir EBcoexpress.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EBcoexpress.buildbin-libdir EBcoexpress_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL EBcoexpress_1.38.0.zip && rm EBcoexpress_1.38.0.tar.gz EBcoexpress_1.38.0.zip
StartedAt: 2022-04-12 05:14:33 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:15:34 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 61.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/EBcoexpress_1.38.0.tar.gz && rm -rf EBcoexpress.buildbin-libdir && mkdir EBcoexpress.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EBcoexpress.buildbin-libdir EBcoexpress_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL EBcoexpress_1.38.0.zip && rm EBcoexpress_1.38.0.tar.gz EBcoexpress_1.38.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 19 83655   19 16048    0     0   134k      0 --:--:-- --:--:-- --:--:--  133k
100 83655  100 83655    0     0   358k      0 --:--:-- --:--:-- --:--:--  358k

install for i386

* installing *source* package 'EBcoexpress' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c EBcoexpress.c -o EBcoexpress.o
EBcoexpress.c: In function 'bwmcCworker':
EBcoexpress.c:74:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
       if(temp < -1 | temp > 1)
          ~~~~~^~~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o EBcoexpress.dll tmp.def EBcoexpress.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/EBcoexpress.buildbin-libdir/00LOCK-EBcoexpress/00new/EBcoexpress/libs/i386
** R
** data
** demo
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'EBcoexpress'
    finding HTML links ... done
    ebCoexpressMeta                         html  
    ebCoexpressSeries                       html  
    fiftyGenes                              html  
    initializeHP                            html  
    makeMyD                                 html  
    priorDiagnostic                         html  
    rankMyGenes                             html  
    showNetwork                             html  
    showPair                                html  
    utilities                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'EBcoexpress' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c EBcoexpress.c -o EBcoexpress.o
EBcoexpress.c: In function 'bwmcCworker':
EBcoexpress.c:74:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
       if(temp < -1 | temp > 1)
          ~~~~~^~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o EBcoexpress.dll tmp.def EBcoexpress.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/EBcoexpress.buildbin-libdir/EBcoexpress/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EBcoexpress' as EBcoexpress_1.38.0.zip
* DONE (EBcoexpress)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'EBcoexpress' successfully unpacked and MD5 sums checked