Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:16 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for BSgenome on tokay2


To the developers/maintainers of the BSgenome package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BSgenome.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 220/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenome 1.62.0  (landing page)
H. Pag├Ęs
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/BSgenome
git_branch: RELEASE_3_14
git_last_commit: 9b1859e
git_last_commit_date: 2021-10-26 11:49:47 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: BSgenome
Version: 1.62.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BSgenome_1.62.0.tar.gz && rm -rf BSgenome.buildbin-libdir && mkdir BSgenome.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BSgenome.buildbin-libdir BSgenome_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BSgenome_1.62.0.zip && rm BSgenome_1.62.0.tar.gz BSgenome_1.62.0.zip
StartedAt: 2022-04-12 06:08:10 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:10:44 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 153.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BSgenome_1.62.0.tar.gz && rm -rf BSgenome.buildbin-libdir && mkdir BSgenome.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BSgenome.buildbin-libdir BSgenome_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BSgenome_1.62.0.zip && rm BSgenome_1.62.0.tar.gz BSgenome_1.62.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 5489k    0  7887    0     0  95709      0  0:00:58 --:--:--  0:00:58 96182
 24 5489k   24 1356k    0     0  1255k      0  0:00:04  0:00:01  0:00:03 1254k
 65 5489k   65 3622k    0     0  1740k      0  0:00:03  0:00:02  0:00:01 1740k
100 5489k  100 5489k    0     0  1849k      0  0:00:02  0:00:02 --:--:-- 1849k

install for i386

* installing *source* package 'BSgenome' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BSgenome'
    finding HTML links ... done
    BSParams-class                          html  
    finding level-2 HTML links ... done

    BSgenome-class                          html  
    BSgenome-utils                          html  
    BSgenomeForge                           html  
    BSgenomeViews-class                     html  
    SNPlocs-class                           html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/BSgenome.buildbin-libdir/00LOCK-BSgenome/00new/BSgenome/help/snplocs.html
    XtraSNPlocs-class                       html  
    available.genomes                       html  
    bsapply                                 html  
    export-methods                          html  
    getSeq-methods                          html  
    injectSNPs                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BSgenome' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BSgenome' as BSgenome_1.62.0.zip
* DONE (BSgenome)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'BSgenome' successfully unpacked and MD5 sums checked