Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:16 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for BSgenome on tokay2


To the developers/maintainers of the BSgenome package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BSgenome.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 220/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenome 1.62.0  (landing page)
H. Pag├Ęs
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/BSgenome
git_branch: RELEASE_3_14
git_last_commit: 9b1859e
git_last_commit_date: 2021-10-26 11:49:47 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: BSgenome
Version: 1.62.0
Command: chmod a+r BSgenome -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BSgenome
StartedAt: 2022-04-12 08:36:44 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 08:39:46 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 182.0 seconds
RetCode: 0
Status:   OK  
PackageFile: BSgenome_1.62.0.tar.gz
PackageFileSize: 5.801 MiB

Command output

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###
### Running command:
###
###   chmod a+r BSgenome -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BSgenome
###
##############################################################################
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* checking for file 'BSgenome/DESCRIPTION' ... OK
* preparing 'BSgenome':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
WARNING: directory 'BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/extdata' is empty
WARNING: directory 'BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata' is empty
* building 'BSgenome_1.62.0.tar.gz'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'BSgenome/inst/extdata/GentlemanLab/BSgenome.Gmellonella.NCBI.ASM364042v2-tools/fasta_to_sorted_2bit.R'