Back to Multiple platform build/check report for BioC 3.13 experimental data |
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This page was generated on 2021-01-14 15:58:58 -0500 (Thu, 14 Jan 2021).
TO THE DEVELOPERS/MAINTAINERS OF THE bsseqData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 43/385 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
bsseqData 0.29.0 Kasper Daniel Hansen
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | [ OK ] | ![]() | |||||
riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK |
Package: bsseqData |
Version: 0.29.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:bsseqData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings bsseqData_0.29.0.tar.gz |
StartedAt: 2021-01-14 11:47:16 -0500 (Thu, 14 Jan 2021) |
EndedAt: 2021-01-14 11:49:26 -0500 (Thu, 14 Jan 2021) |
EllapsedTime: 130.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: bsseqData.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:bsseqData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings bsseqData_0.29.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/bsseqData.Rcheck’ * using R Under development (unstable) (2021-01-05 r79797) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘bsseqData/DESCRIPTION’ ... OK * this is package ‘bsseqData’ version ‘0.29.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘bsseqData’ can be installed ... OK * checking installed package size ... NOTE installed size is 201.0Mb sub-directories of 1Mb or more: data 140.0Mb umtab 60.8Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.13-data-experiment/meat/bsseqData.Rcheck/00check.log’ for details.
bsseqData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL bsseqData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘bsseqData’ ... ** using staged installation ** data *** moving datasets to lazyload DB ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bsseqData)
bsseqData.Rcheck/bsseqData-Ex.timings
name | user | system | elapsed | |
BS.cancer.ex | 3.226 | 0.116 | 3.352 | |
BS.cancer.ex.fit | 3.054 | 0.292 | 3.346 | |
BS.cancer.ex.tstat | 0.226 | 0.052 | 0.279 | |
keepLoci.ex | 0.002 | 0.000 | 0.002 | |