Back to Multiple platform build/check report for BioC 3.13 experimental data
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

CHECK report for beta7 on malbec2

This page was generated on 2021-01-14 15:58:57 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE beta7 PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 26/385HostnameOS / ArchINSTALLBUILDCHECK
beta7 1.29.0
Jean Yang
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/beta7
Branch: master
Last Commit: 219d575
Last Changed Date: 2020-10-27 09:44:50 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK  WARNINGS 

Summary

Package: beta7
Version: 1.29.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:beta7.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings beta7_1.29.0.tar.gz
StartedAt: 2021-01-14 11:42:40 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 11:42:54 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 13.8 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: beta7.Rcheck
Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:beta7.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings beta7_1.29.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/beta7.Rcheck’
* using R Under development (unstable) (2021-01-05 r79797)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘beta7/DESCRIPTION’ ... OK
* this is package ‘beta7’ version ‘1.29.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .git_fetch_output.txt
  .git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘beta7’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 37.3Mb
  sub-directories of 1Mb or more:
    beta7  35.8Mb
    data    1.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory ‘data’ contains no data sets.
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... WARNING
Files not of a type allowed in a ‘data’ directory:
  ‘Rdata.rdb’ ‘Rdata.rds’ ‘Rdata.rdx’
Please use e.g. ‘inst/extdata’ for non-R data files

* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.13-data-experiment/meat/beta7.Rcheck/00check.log’
for details.



Installation output

beta7.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL beta7
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘beta7’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (beta7)

Tests output


Example timings

beta7.Rcheck/beta7-Ex.timings

nameusersystemelapsed
beta70.1930.0240.227