Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-14 15:59:04 -0500 (Thu, 14 Jan 2021).
TO THE DEVELOPERS/MAINTAINERS OF THE QDNAseq.hg19 PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 284/385 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
QDNAseq.hg19 1.21.0 Daoud Sie
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | [ OK ] | ![]() | |||||
riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK |
Package: QDNAseq.hg19 |
Version: 1.21.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:QDNAseq.hg19.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings QDNAseq.hg19_1.21.0.tar.gz |
StartedAt: 2021-01-14 12:38:17 -0500 (Thu, 14 Jan 2021) |
EndedAt: 2021-01-14 12:40:45 -0500 (Thu, 14 Jan 2021) |
EllapsedTime: 148.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: QDNAseq.hg19.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:QDNAseq.hg19.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings QDNAseq.hg19_1.21.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/QDNAseq.hg19.Rcheck’ * using R Under development (unstable) (2021-01-05 r79797) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘QDNAseq.hg19/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘QDNAseq.hg19’ version ‘1.21.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘QDNAseq.hg19’ can be installed ... OK * checking installed package size ... NOTE installed size is 35.4Mb sub-directories of 1Mb or more: data 35.3Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed hg19.1kbp.SR50 19.006 0.308 19.313 * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.13-data-experiment/meat/QDNAseq.hg19.Rcheck/00check.log’ for details.
QDNAseq.hg19.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL QDNAseq.hg19 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘QDNAseq.hg19’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (QDNAseq.hg19)
QDNAseq.hg19.Rcheck/QDNAseq.hg19-Ex.timings
name | user | system | elapsed | |
QDNAseq.hg19-package | 0.824 | 0.012 | 0.836 | |
hg19.1000kbp.SR50 | 0.022 | 0.003 | 0.024 | |
hg19.100kbp.SR50 | 0.178 | 0.008 | 0.186 | |
hg19.10kbp.SR50 | 1.827 | 0.044 | 1.871 | |
hg19.15kbp.SR50 | 1.593 | 0.024 | 1.618 | |
hg19.1kbp.SR50 | 19.006 | 0.308 | 19.313 | |
hg19.30kbp.SR50 | 0.559 | 0.020 | 0.578 | |
hg19.500kbp.SR50 | 0.044 | 0.000 | 0.043 | |
hg19.50kbp.SR50 | 0.397 | 0.020 | 0.417 | |
hg19.5kbp.SR50 | 3.412 | 0.096 | 3.508 | |