Shaohang Xu
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/sapFinder |
| Branch: RELEASE_3_12 |
| Last Commit: e960481 |
| Last Changed Date: 2020-10-27 10:55:33 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:25 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the sapFinder package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1618/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Shaohang Xu
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| Package: sapFinder |
| Version: 1.28.0 |
| Command: rm -rf sapFinder.buildbin-libdir && mkdir sapFinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch --build --library=sapFinder.buildbin-libdir sapFinder_1.28.0.tar.gz |
| StartedAt: 2021-05-06 10:02:21 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 10:02:46 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 25.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: sapFinder_1.28.0.zip |
| PackageFileSize: 4.711 MiB |
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### Running command:
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### rm -rf sapFinder.buildbin-libdir && mkdir sapFinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch --build --library=sapFinder.buildbin-libdir sapFinder_1.28.0.tar.gz
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* installing *source* package 'sapFinder' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dataHandle.cpp -o dataHandle.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o sapFinder.dll tmp.def dataHandle.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/biocbuild/bbs-3.12-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/sapFinder.buildbin-libdir/00LOCK-sapFinder/00new/sapFinder/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'rTANDEM' is deprecated and will be removed from Bioconductor
version 3.13
** help
*** installing help indices
converting help for package 'sapFinder'
finding HTML links ... done
dbCreator html
easyRun html
parserGear html
reportCreator html
runTandem html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'rTANDEM' is deprecated and will be removed from Bioconductor
version 3.13
Warning: Package 'sapFinder' is deprecated and will be removed from Bioconductor
version 3.13
** testing if installed package can be loaded from final location
Warning: Package 'rTANDEM' is deprecated and will be removed from Bioconductor
version 3.13
Warning: Package 'sapFinder' is deprecated and will be removed from Bioconductor
version 3.13
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'sapFinder' as sapFinder_1.28.0.zip
* DONE (sapFinder)