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INSTALL report for chimeraviz on tokay1

This page was generated on 2020-08-13 11:41:44 -0400 (Thu, 13 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE chimeraviz PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 269/1885HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
chimeraviz 1.15.0
Stian Lågstad
Snapshot Date: 2020-08-12 14:52:00 -0400 (Wed, 12 Aug 2020)
URL: https://git.bioconductor.org/packages/chimeraviz
Branch: master
Last Commit: 82f67eb
Last Changed Date: 2020-05-24 06:06:11 -0400 (Sun, 24 May 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  ERROR 
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  ERROR  OK 
merida1 macOS 10.14.6 Mojave / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: chimeraviz
Version: 1.15.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/chimeraviz_1.15.0.tar.gz && rm -rf chimeraviz.buildbin-libdir && mkdir chimeraviz.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chimeraviz.buildbin-libdir chimeraviz_1.15.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL chimeraviz_1.15.0.zip && rm chimeraviz_1.15.0.tar.gz chimeraviz_1.15.0.zip
StartedAt: 2020-08-12 18:58:03 -0400 (Wed, 12 Aug 2020)
EndedAt: 2020-08-12 19:00:10 -0400 (Wed, 12 Aug 2020)
EllapsedTime: 126.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/chimeraviz_1.15.0.tar.gz && rm -rf chimeraviz.buildbin-libdir && mkdir chimeraviz.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chimeraviz.buildbin-libdir chimeraviz_1.15.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL chimeraviz_1.15.0.zip && rm chimeraviz_1.15.0.tar.gz chimeraviz_1.15.0.zip
###
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100 2620k  100 2620k    0     0  32.4M      0 --:--:-- --:--:-- --:--:-- 34.1M

install for i386

* installing *source* package 'chimeraviz' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'chimeraviz'
    finding HTML links ... done
    Fusion-class                            html  
    PartnerGene-class                       html  
    add_fusion_reads_alignment              html  
    chimeraviz-internals-fusions_to_gene_label_data
                                            html  
    chimeraviz-internals-fusions_to_link_data
                                            html  
    chimeraviz-internals-scaleListToInterval
                                            html  
    chimeraviz                              html  
    create_fusion_report                    html  
    decide_transcript_category              html  
    down_shift                              html  
    downstream_partner_gene                 html  
    fetch_reads_from_fastq                  html  
    fusion_spanning_reads_count             html  
    fusion_split_reads_count                html  
    fusion_to_data_frame                    html  
    get_ensembl_ids                         html  
    get_fusion_by_chromosome                html  
    get_fusion_by_gene_name                 html  
    get_fusion_by_id                        html  
    get_transcripts_ensembl_db              html  
    import_aeron                            html  
    import_chimpipe                         html  
    import_defuse                           html  
    import_ericscript                       html  
    import_function_non_ucsc                html  
    import_fusioncatcher                    html  
    import_fusionmap                        html  
    import_infusion                         html  
    import_jaffa                            html  
    import_oncofuse                         html  
    import_prada                            html  
    import_soapfuse                         html  
    import_squid                            html  
    import_starfusion                       html  
    partner_gene_ensembl_id                 html  
    partner_gene_junction_sequence          html  
    plot_circle                             html  
    plot_fusion                             html  
    plot_fusion_reads                       html  
    plot_fusion_transcript                  html  
    plot_fusion_transcript_with_protein_domain
                                            html  
    plot_fusion_transcripts_graph           html  
    plot_transcripts                        html  
    raw_Homo_sapiens.GRCh37.74              html  
    raw_chimpipe                            html  
    raw_cytobandhg19                        html  
    raw_cytobandhg38                        html  
    raw_defuse                              html  
    raw_ericscript                          html  
    raw_fusion5267proteindomains            html  
    raw_fusion5267reads                     html  
    raw_fusion5267readsBedGraph             html  
    raw_fusioncatcher                       html  
    raw_fusionmap                           html  
    raw_infusion                            html  
    raw_jaffa                               html  
    raw_oncofuse                            html  
    raw_prada                               html  
    raw_soapfuse                            html  
    raw_starfusion                          html  
    select_transcript                       html  
    show-Fusion-method                      html  
    show-PartnerGene-method                 html  
    split_on_utr_and_add_feature            html  
    upstream_partner_gene                   html  
    write_fusion_reference                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'chimeraviz' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'chimeraviz' as chimeraviz_1.15.0.zip
* DONE (chimeraviz)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'chimeraviz' successfully unpacked and MD5 sums checked