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BUILD BIN report for batchelor on merida1

This page was generated on 2020-08-07 12:40:15 -0400 (Fri, 07 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE batchelor PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 116/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
batchelor 1.5.2
Aaron Lun
Snapshot Date: 2020-08-06 14:50:46 -0400 (Thu, 06 Aug 2020)
URL: https://git.bioconductor.org/packages/batchelor
Branch: master
Last Commit: e05a846
Last Changed Date: 2020-07-12 04:08:02 -0400 (Sun, 12 Jul 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: batchelor
Version: 1.5.2
Command: rm -rf batchelor.buildbin-libdir && mkdir batchelor.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh batchelor_1.5.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R batchelor.buildbin-libdir
StartedAt: 2020-08-07 07:46:29 -0400 (Fri, 07 Aug 2020)
EndedAt: 2020-08-07 07:47:31 -0400 (Fri, 07 Aug 2020)
EllapsedTime: 61.6 seconds
RetCode: 0
Status:  OK 
PackageFile: batchelor_1.5.2.tgz
PackageFileSize: 927 KiB

Command output

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### Running command:
###
###   rm -rf batchelor.buildbin-libdir && mkdir batchelor.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh batchelor_1.5.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R batchelor.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=batchelor.buildbin-libdir batchelor_1.5.2.tar.gz'
>>>>>>> 

* installing *source* package ‘batchelor’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/beachmat/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/beachmat/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c adjust_shift_variance.cpp -o adjust_shift_variance.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/beachmat/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c find_mutual_nns.cpp -o find_mutual_nns.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/beachmat/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c smooth_gaussian_kernel.cpp -o smooth_gaussian_kernel.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/beachmat/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c utils.cpp -o utils.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o batchelor.so RcppExports.o adjust_shift_variance.o find_mutual_nns.o smooth_gaussian_kernel.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/batchelor.buildbin-libdir/00LOCK-batchelor/00new/batchelor/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (batchelor)


>>>>>>> 
>>>>>>> FIXING LINKS FOR batchelor.buildbin-libdir/batchelor/libs/batchelor.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "batchelor.buildbin-libdir/batchelor/libs/batchelor.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "batchelor.buildbin-libdir/batchelor/libs/batchelor.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "batchelor.buildbin-libdir/batchelor/libs/batchelor.so"