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INSTALL report for TCGAutils on tokay1

This page was generated on 2021-05-06 12:33:55 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the TCGAutils package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1844/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TCGAutils 1.10.1  (landing page)
Marcel Ramos
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/TCGAutils
Branch: RELEASE_3_12
Last Commit: d619ddd
Last Changed Date: 2021-04-16 11:44:03 -0400 (Fri, 16 Apr 2021)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: TCGAutils
Version: 1.10.1
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/TCGAutils_1.10.1.tar.gz && rm -rf TCGAutils.buildbin-libdir && mkdir TCGAutils.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAutils.buildbin-libdir TCGAutils_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL TCGAutils_1.10.1.zip && rm TCGAutils_1.10.1.tar.gz TCGAutils_1.10.1.zip
StartedAt: 2021-05-05 18:57:40 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 18:59:19 -0400 (Wed, 05 May 2021)
EllapsedTime: 98.8 seconds
RetCode: 0
Status:   OK   

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/TCGAutils_1.10.1.tar.gz && rm -rf TCGAutils.buildbin-libdir && mkdir TCGAutils.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAutils.buildbin-libdir TCGAutils_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL TCGAutils_1.10.1.zip && rm TCGAutils_1.10.1.tar.gz TCGAutils_1.10.1.zip
###
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100 66342  100 66342    0     0  1290k      0 --:--:-- --:--:-- --:--:-- 1322k

install for i386

* installing *source* package 'TCGAutils' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'TCGAutils'
    finding HTML links ... done
    ID-translation                          html  
    TCGAbarcode                             html  
    TCGAbiospec                             html  
    TCGAprimaryTumors                       html  
    finding level-2 HTML links ... done

    TCGAsampleSelect                        html  
    TCGAutils-package                       html  
    builds                                  html  
    clinicalNames                           html  
    curatedTCGAData-helpers                 html  
    diseaseCodes                            html  
    findGRangesCols                         html  
    generateMap                             html  
    getFileName                             html  
    hidden-helpers                          html  
    imputeAssay                             html  
    makeGRangesListFromCopyNumber           html  
    makeGRangesListFromExonFiles            html  
    makeSummarizedExperimentFromGISTIC      html  
    mergeColData                            html  
    oncoPrintTCGA                           html  
    sampleTypes                             html  
    simplifyTCGA                            html  
    trimColData                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'TCGAutils' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TCGAutils' as TCGAutils_1.10.1.zip
* DONE (TCGAutils)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'TCGAutils' successfully unpacked and MD5 sums checked