| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:32:18 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the MmPalateMiRNA package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1128/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Guy Brock
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
| Package: MmPalateMiRNA |
| Version: 1.40.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/MmPalateMiRNA_1.40.0.tar.gz && rm -rf MmPalateMiRNA.buildbin-libdir && mkdir MmPalateMiRNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MmPalateMiRNA.buildbin-libdir MmPalateMiRNA_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL MmPalateMiRNA_1.40.0.zip && rm MmPalateMiRNA_1.40.0.tar.gz MmPalateMiRNA_1.40.0.zip |
| StartedAt: 2021-05-05 17:28:53 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:29:26 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 32.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/MmPalateMiRNA_1.40.0.tar.gz && rm -rf MmPalateMiRNA.buildbin-libdir && mkdir MmPalateMiRNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MmPalateMiRNA.buildbin-libdir MmPalateMiRNA_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL MmPalateMiRNA_1.40.0.zip && rm MmPalateMiRNA_1.40.0.tar.gz MmPalateMiRNA_1.40.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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install for i386
* installing *source* package 'MmPalateMiRNA' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MmPalateMiRNA'
finding HTML links ... done
MADvsMedianPlot html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/MADvsMedianPlot.Rd:29: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/MADvsMedianPlot.Rd:30: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/MADvsMedianPlot.Rd:36: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/MADvsMedianPlot.Rd:40: file link 'densityplot' in package 'lattice' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/MADvsMedianPlot.Rd:49: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/MADvsMedianPlot.Rd:50: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
MAplot html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/MAplot.Rd:29: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/MAplot.Rd:30: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
MmPalateMiRNA-package html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:29: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:33: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:34: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:35: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:36: file link 'lattice-package' in package 'lattice' does not exist and so has been treated as a topic
PalateData html
finding level-2 HTML links ... done
checkMVs html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/checkMVs.Rd:9: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/checkMVs.Rd:13: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/checkMVs.Rd:22: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
checkOutliers html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/checkOutliers.Rd:8: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/checkOutliers.Rd:13: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/checkOutliers.Rd:23: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
clustPlot html
densityplot html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/densityplot.Rd:32: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/densityplot.Rd:33: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/densityplot.Rd:34: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/densityplot.Rd:40: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/densityplot.Rd:44: file link 'densityplot' in package 'lattice' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/densityplot.Rd:51: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/densityplot.Rd:60: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/densityplot.Rd:61: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
filterArray html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/filterArray.Rd:8: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/filterArray.Rd:12: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/filterArray.Rd:26: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/filterArray.Rd:57: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
fixMVs html
fixOutliers html
imputeKNN html
levelplot html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/levelplot.Rd:37: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/levelplot.Rd:38: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/levelplot.Rd:39: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/levelplot.Rd:45: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/levelplot.Rd:59: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/levelplot.Rd:68: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6xt29Q/R.INSTALL157867281c93/MmPalateMiRNA/man/levelplot.Rd:69: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'MmPalateMiRNA' is deprecated and will be removed from
Bioconductor version 3.13
** testing if installed package can be loaded from final location
Warning: Package 'MmPalateMiRNA' is deprecated and will be removed from
Bioconductor version 3.13
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MmPalateMiRNA' ...
** testing if installed package can be loaded
Warning: Package 'MmPalateMiRNA' is deprecated and will be removed from
Bioconductor version 3.13
* MD5 sums
packaged installation of 'MmPalateMiRNA' as MmPalateMiRNA_1.40.0.zip
* DONE (MmPalateMiRNA)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'MmPalateMiRNA' successfully unpacked and MD5 sums checked