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BUILD BIN report for MmPalateMiRNA on tokay1

This page was generated on 2021-05-06 12:32:19 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the MmPalateMiRNA package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1128/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MmPalateMiRNA 1.40.0  (landing page)
Guy Brock
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/MmPalateMiRNA
Branch: RELEASE_3_12
Last Commit: 206d698
Last Changed Date: 2020-10-27 10:43:35 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    ERROR  
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    ERROR    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    ERROR    OK  

Summary

Package: MmPalateMiRNA
Version: 1.40.0
Command: rm -rf MmPalateMiRNA.buildbin-libdir && mkdir MmPalateMiRNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MmPalateMiRNA.buildbin-libdir MmPalateMiRNA_1.40.0.tar.gz
StartedAt: 2021-05-06 09:33:28 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 09:34:05 -0400 (Thu, 06 May 2021)
EllapsedTime: 37.3 seconds
RetCode: 0
Status:   OK   
PackageFile: MmPalateMiRNA_1.40.0.zip
PackageFileSize: 2.119 MiB

Command output

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### Running command:
###
###   rm -rf MmPalateMiRNA.buildbin-libdir && mkdir MmPalateMiRNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MmPalateMiRNA.buildbin-libdir MmPalateMiRNA_1.40.0.tar.gz
###
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install for i386

* installing *source* package 'MmPalateMiRNA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MmPalateMiRNA'
    finding HTML links ... done
    MADvsMedianPlot                         html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/MADvsMedianPlot.Rd:29: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/MADvsMedianPlot.Rd:30: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/MADvsMedianPlot.Rd:36: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/MADvsMedianPlot.Rd:40: file link 'densityplot' in package 'lattice' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/MADvsMedianPlot.Rd:49: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/MADvsMedianPlot.Rd:50: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    MAplot                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/MAplot.Rd:29: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/MAplot.Rd:30: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    MmPalateMiRNA-package                   html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:29: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:33: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:34: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:35: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:36: file link 'lattice-package' in package 'lattice' does not exist and so has been treated as a topic
    PalateData                              html  
    finding level-2 HTML links ... done

    checkMVs                                html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/checkMVs.Rd:9: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/checkMVs.Rd:13: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/checkMVs.Rd:22: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
    checkOutliers                           html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/checkOutliers.Rd:8: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/checkOutliers.Rd:13: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/checkOutliers.Rd:23: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
    clustPlot                               html  
    densityplot                             html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/densityplot.Rd:32: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/densityplot.Rd:33: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/densityplot.Rd:34: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/densityplot.Rd:40: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/densityplot.Rd:44: file link 'densityplot' in package 'lattice' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/densityplot.Rd:51: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/densityplot.Rd:60: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/densityplot.Rd:61: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    filterArray                             html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/filterArray.Rd:8: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/filterArray.Rd:12: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/filterArray.Rd:26: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/filterArray.Rd:57: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
    fixMVs                                  html  
    fixOutliers                             html  
    imputeKNN                               html  
    levelplot                               html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/levelplot.Rd:37: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/levelplot.Rd:38: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/levelplot.Rd:39: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/levelplot.Rd:45: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/levelplot.Rd:59: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/levelplot.Rd:68: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2xe10I/R.INSTALL3e7018a24f32/MmPalateMiRNA/man/levelplot.Rd:69: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'MmPalateMiRNA' is deprecated and will be removed from
  Bioconductor version 3.13
** testing if installed package can be loaded from final location
Warning: Package 'MmPalateMiRNA' is deprecated and will be removed from
  Bioconductor version 3.13
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MmPalateMiRNA' ...
** testing if installed package can be loaded
Warning: Package 'MmPalateMiRNA' is deprecated and will be removed from
  Bioconductor version 3.13
* MD5 sums
packaged installation of 'MmPalateMiRNA' as MmPalateMiRNA_1.40.0.zip
* DONE (MmPalateMiRNA)