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INSTALL report for CellMapper on tokay1

This page was generated on 2021-04-22 12:30:19 -0400 (Thu, 22 Apr 2021).

To the developers/maintainers of the CellMapper package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 254/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellMapper 1.16.0  (landing page)
Brad Nelms
Snapshot Date: 2021-04-21 14:50:06 -0400 (Wed, 21 Apr 2021)
URL: https://git.bioconductor.org/packages/CellMapper
Branch: RELEASE_3_12
Last Commit: c73a675
Last Changed Date: 2020-10-27 11:16:49 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository

Summary

Package: CellMapper
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/CellMapper_1.16.0.tar.gz && rm -rf CellMapper.buildbin-libdir && mkdir CellMapper.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CellMapper.buildbin-libdir CellMapper_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL CellMapper_1.16.0.zip && rm CellMapper_1.16.0.tar.gz CellMapper_1.16.0.zip
StartedAt: 2021-04-21 17:00:05 -0400 (Wed, 21 Apr 2021)
EndedAt: 2021-04-21 17:00:34 -0400 (Wed, 21 Apr 2021)
EllapsedTime: 28.5 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/CellMapper_1.16.0.tar.gz && rm -rf CellMapper.buildbin-libdir && mkdir CellMapper.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CellMapper.buildbin-libdir CellMapper_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL CellMapper_1.16.0.zip && rm CellMapper_1.16.0.tar.gz CellMapper_1.16.0.zip
###
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install for i386

* installing *source* package 'CellMapper' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
** help
*** installing help indices
  converting help for package 'CellMapper'
    finding HTML links ... done
    CMprep                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgvxadq/R.INSTALL13a82b0a1497/CellMapper/man/CMprep.Rd:51: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgvxadq/R.INSTALL13a82b0a1497/CellMapper/man/CMprep.Rd:52: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic
    CMsearch                                html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgvxadq/R.INSTALL13a82b0a1497/CellMapper/man/CMsearch.Rd:74: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic
    CellMapperList-class                    html  
    ExampleGeneLists                        html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgvxadq/R.INSTALL13a82b0a1497/CellMapper/man/ExampleGeneLists.Rd:51: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgvxadq/R.INSTALL13a82b0a1497/CellMapper/man/ExampleGeneLists.Rd:52: file link 'ExperimentHub' in package 'ExperimentHub' does not exist and so has been treated as a topic
    ReplicateManuscript                     html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgvxadq/R.INSTALL13a82b0a1497/CellMapper/man/ReplicateManuscript.Rd:33: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgvxadq/R.INSTALL13a82b0a1497/CellMapper/man/ReplicateManuscript.Rd:34: file link 'ExperimentHub' in package 'ExperimentHub' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CellMapper' ...
** testing if installed package can be loaded
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
* MD5 sums
packaged installation of 'CellMapper' as CellMapper_1.16.0.zip
* DONE (CellMapper)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'CellMapper' successfully unpacked and MD5 sums checked