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INSTALL report for CellMapper on tokay1

This page was generated on 2020-10-24 11:01:20 -0400 (Sat, 24 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE CellMapper PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 254/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellMapper 1.15.0
Brad Nelms
Snapshot Date: 2020-10-23 14:40:36 -0400 (Fri, 23 Oct 2020)
URL: https://git.bioconductor.org/packages/CellMapper
Branch: master
Last Commit: 74e8372
Last Changed Date: 2020-04-27 15:00:27 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK  WARNINGS  OK 
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: CellMapper
Version: 1.15.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/CellMapper_1.15.0.tar.gz && rm -rf CellMapper.buildbin-libdir && mkdir CellMapper.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CellMapper.buildbin-libdir CellMapper_1.15.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL CellMapper_1.15.0.zip && rm CellMapper_1.15.0.tar.gz CellMapper_1.15.0.zip
StartedAt: 2020-10-23 17:00:55 -0400 (Fri, 23 Oct 2020)
EndedAt: 2020-10-23 17:01:35 -0400 (Fri, 23 Oct 2020)
EllapsedTime: 39.7 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/CellMapper_1.15.0.tar.gz && rm -rf CellMapper.buildbin-libdir && mkdir CellMapper.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CellMapper.buildbin-libdir CellMapper_1.15.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL CellMapper_1.15.0.zip && rm CellMapper_1.15.0.tar.gz CellMapper_1.15.0.zip
###
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install for i386

* installing *source* package 'CellMapper' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
** help
*** installing help indices
  converting help for package 'CellMapper'
    finding HTML links ... done
    CMprep                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpEdmbEq/R.INSTALL12a07e8a5647/CellMapper/man/CMprep.Rd:51: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpEdmbEq/R.INSTALL12a07e8a5647/CellMapper/man/CMprep.Rd:52: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic
    CMsearch                                html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpEdmbEq/R.INSTALL12a07e8a5647/CellMapper/man/CMsearch.Rd:74: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic
    CellMapperList-class                    html  
    ExampleGeneLists                        html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpEdmbEq/R.INSTALL12a07e8a5647/CellMapper/man/ExampleGeneLists.Rd:51: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpEdmbEq/R.INSTALL12a07e8a5647/CellMapper/man/ExampleGeneLists.Rd:52: file link 'ExperimentHub' in package 'ExperimentHub' does not exist and so has been treated as a topic
    ReplicateManuscript                     html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpEdmbEq/R.INSTALL12a07e8a5647/CellMapper/man/ReplicateManuscript.Rd:33: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpEdmbEq/R.INSTALL12a07e8a5647/CellMapper/man/ReplicateManuscript.Rd:34: file link 'ExperimentHub' in package 'ExperimentHub' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CellMapper' ...
** testing if installed package can be loaded
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
* MD5 sums
packaged installation of 'CellMapper' as CellMapper_1.15.0.zip
* DONE (CellMapper)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'CellMapper' successfully unpacked and MD5 sums checked