Back to Multiple platform build/check report for BioC 3.12
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for BicARE on tokay1

This page was generated on 2020-08-11 11:37:11 -0400 (Tue, 11 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BicARE PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 137/1885HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BicARE 1.47.0
Pierre Gestraud
Snapshot Date: 2020-08-10 14:50:56 -0400 (Mon, 10 Aug 2020)
URL: https://git.bioconductor.org/packages/BicARE
Branch: master
Last Commit: 45cb7bc
Last Changed Date: 2020-04-27 14:18:27 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BicARE
Version: 1.47.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/BicARE_1.47.0.tar.gz && rm -rf BicARE.buildbin-libdir && mkdir BicARE.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BicARE.buildbin-libdir BicARE_1.47.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BicARE_1.47.0.zip && rm BicARE_1.47.0.tar.gz BicARE_1.47.0.zip
StartedAt: 2020-08-10 17:48:36 -0400 (Mon, 10 Aug 2020)
EndedAt: 2020-08-10 17:49:05 -0400 (Mon, 10 Aug 2020)
EllapsedTime: 28.4 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/BicARE_1.47.0.tar.gz && rm -rf BicARE.buildbin-libdir && mkdir BicARE.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BicARE.buildbin-libdir BicARE_1.47.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BicARE_1.47.0.zip && rm BicARE_1.47.0.tar.gz BicARE_1.47.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  200k  100  200k    0     0  2052k      0 --:--:-- --:--:-- --:--:-- 2130k

install for i386

* installing *source* package 'BicARE' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c BicARE.c -o BicARE.o
BicARE.c: In function 'floc':
BicARE.c:439:12: warning: unused variable 'invk' [-Wunused-variable]
     double invk = 1/(double)*k;
            ^~~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o BicARE.dll tmp.def BicARE.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/BicARE.buildbin-libdir/00LOCK-BicARE/00new/BicARE/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BicARE'
    finding HTML links ... done
    BicARE-package                          html  
    FLOC                                    html  
    bicluster                               html  
    makeReport                              html  
    residue                                 html  
    sample.bicData                          html  
    sample.biclustering                     html  
    testAnnot                               html  
    testSet                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BicARE' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c BicARE.c -o BicARE.o
BicARE.c: In function 'floc':
BicARE.c:439:12: warning: unused variable 'invk' [-Wunused-variable]
     double invk = 1/(double)*k;
            ^~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o BicARE.dll tmp.def BicARE.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/BicARE.buildbin-libdir/BicARE/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BicARE' as BicARE_1.47.0.zip
* DONE (BicARE)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'BicARE' successfully unpacked and MD5 sums checked