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INSTALL report for BatchQC on tokay1

This page was generated on 2020-08-10 12:20:29 -0400 (Mon, 10 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BatchQC PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 117/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BatchQC 1.17.2
Solaiappan Manimaran
Snapshot Date: 2020-08-09 14:51:29 -0400 (Sun, 09 Aug 2020)
URL: https://git.bioconductor.org/packages/BatchQC
Branch: master
Last Commit: b610f4a
Last Changed Date: 2020-07-13 01:42:07 -0400 (Mon, 13 Jul 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BatchQC
Version: 1.17.2
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/BatchQC_1.17.2.tar.gz && rm -rf BatchQC.buildbin-libdir && mkdir BatchQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BatchQC.buildbin-libdir BatchQC_1.17.2.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BatchQC_1.17.2.zip && rm BatchQC_1.17.2.tar.gz BatchQC_1.17.2.zip
StartedAt: 2020-08-09 18:16:43 -0400 (Sun, 09 Aug 2020)
EndedAt: 2020-08-09 18:17:46 -0400 (Sun, 09 Aug 2020)
EllapsedTime: 62.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/BatchQC_1.17.2.tar.gz && rm -rf BatchQC.buildbin-libdir && mkdir BatchQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BatchQC.buildbin-libdir BatchQC_1.17.2.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BatchQC_1.17.2.zip && rm BatchQC_1.17.2.tar.gz BatchQC_1.17.2.zip
###
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install for i386

* installing *source* package 'BatchQC' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BatchQC'
    finding HTML links ... done
    BatchQCout-class                        html  
    batchQC                                 html  
    batchQC_analyze                         html  
    batchQC_condition_adjusted              html  
    batchQC_filter_genes                    html  
    batchQC_fsva_adjusted                   html  
    batchQC_num.sv                          html  
    batchQC_shapeVariation                  html  
    batchQC_sva                             html  
    batchQC_svregress_adjusted              html  
    batchqc_circosplot                      html  
    batchqc_correlation                     html  
    batchqc_corscatter                      html  
    batchqc_explained_variation             html  
    batchqc_heatmap                         html  
    batchqc_pc_explained_variation          html  
    batchqc_pca                             html  
    batchqc_pca_svd                         html  
    batchtest                               html  
    combatPlot                              html  
    example_batchqc_data                    html  
    getShinyInput                           html  
    getShinyInputCombat                     html  
    getShinyInputOrig                       html  
    getShinyInputSVA                        html  
    getShinyInputSVAf                       html  
    getShinyInputSVAr                       html  
    gnormalize                              html  
    lmFitC                                  html  
    log2CPM                                 html  
    makeSVD                                 html  
    pcRes                                   html  
    plotPC                                  html  
    plot_genewise_moments                   html  
    plot_samplewise_moments                 html  
    protein_example_data                    html  
    rnaseq_sim                              html  
    setShinyInput                           html  
    setShinyInputCombat                     html  
    setShinyInputOrig                       html  
    setShinyInputSVA                        html  
    setShinyInputSVAf                       html  
    setShinyInputSVAr                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BatchQC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BatchQC' as BatchQC_1.17.2.zip
* DONE (BatchQC)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'BatchQC' successfully unpacked and MD5 sums checked