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MouseGastrulationData

This is the development version of MouseGastrulationData; for the stable release version, see MouseGastrulationData.

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis


Bioconductor version: Development (3.20)

Provides processed and raw count data for single-cell RNA sequencing, single-cell ATAC-seq, and seqFISH (spatial transcriptomic) experiments performed along a timecourse of mouse gastrulation and early organogenesis.

Author: Jonathan Griffiths [aut, cre], Aaron Lun [aut]

Maintainer: Jonathan Griffiths <jonathan.griffiths.94 at gmail.com>

Citation (from within R, enter citation("MouseGastrulationData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MouseGastrulationData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseGastrulationData")
Available datasets HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Mus_musculus_Data, RNASeqData, SequencingData, SingleCellData
Version 1.19.0
License GPL-3
Depends R (>= 4.1), SingleCellExperiment, SummarizedExperiment, SpatialExperiment
Imports methods, ExperimentHub, BiocGenerics, S4Vectors, BumpyMatrix
System Requirements
URL https://github.com/MarioniLab/MouseGastrulationData
Bug Reports https://github.com/MarioniLab/MouseGastrulationData/issues
See More
Suggests BiocStyle, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me OSCA.multisample
Imports Me
Suggests Me miloR
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MouseGastrulationData_1.19.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/MouseGastrulationData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MouseGastrulationData
Package Short Url https://bioconductor.org/packages/MouseGastrulationData/
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