BumpyMatrix

DOI: 10.18129/B9.bioc.BumpyMatrix    

This is the development version of BumpyMatrix; for the stable release version, see BumpyMatrix.

Bumpy Matrix of Non-Scalar Objects

Bioconductor version: Development (3.15)

Implements the BumpyMatrix class and several subclasses for holding non-scalar objects in each entry of the matrix. This is akin to a ragged array but the raggedness is in the third dimension, much like a bumpy surface - hence the name. Of particular interest is the BumpyDataFrameMatrix, where each entry is a Bioconductor data frame. This allows us to naturally represent multivariate data in a format that is compatible with two-dimensional containers like the SummarizedExperiment and MultiAssayExperiment objects.

Author: Aaron Lun [aut, cre], Genentech, Inc. [cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("BumpyMatrix")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BumpyMatrix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BumpyMatrix")

 

HTML R Script The BumpyMatrix class
PDF   Reference Manual
Text   LICENSE

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.3.0
In Bioconductor since BioC 3.13 (R-4.1) (0.5 years)
License MIT + file LICENSE
Depends
Imports utils, methods, Matrix, S4Vectors, IRanges
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL https://bioconductor.org/packages/BumpyMatrix
BugReports https://github.com/LTLA/BumpyMatrix/issues
Depends On Me
Imports Me CoreGx, MouseGastrulationData
Suggests Me ggspavis, SpatialExperiment
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BumpyMatrix_1.3.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra) BumpyMatrix_1.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BumpyMatrix
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BumpyMatrix
Package Short Url https://bioconductor.org/packages/BumpyMatrix/
Package Downloads Report Download Stats

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