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BSgenome.Hsapiens.UCSC.hg19

This is the development version of BSgenome.Hsapiens.UCSC.hg19; for the stable release version, see BSgenome.Hsapiens.UCSC.hg19.

Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)


Bioconductor version: Development (3.19)

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, based on GRCh37.p13) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Hsapiens.UCSC.hg19")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BSgenome.Hsapiens.UCSC.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, BSgenome, Genetics, Homo_sapiens
Version 1.4.3
License Artistic-2.0
Depends BSgenome(>= 1.54.0)
Imports BSgenome
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me annotation, BSgenome.Hsapiens.UCSC.hg19.masked, CODEX, SCOPE, sequencing, traseR, variants
Imports Me appreci8R, ATACCoGAPS, brainflowprobes, BSgenome.Hsapiens.UCSC.hg19.masked, cfDNAPro, ChIPComp, circRNAprofiler, decompTumor2Sig, HiLDA, katdetectr, MADSEQ, musicatk, RareVariantVis, RCAS, TCGAWorkflow, YAPSA
Suggests Me AneuFinder, ATACseqQC, BadRegionFinder, Basic4Cseq, BBCAnalyzer, biovizBase, bnbc, ChIPpeakAnno, chromVAR, CNEr, CNVfilteR, CRISPRseek, customProDB, DAMEfinder, DNAshapeR, EpiCompare, esATAC, FDb.FANTOM4.promoters.hg19, FDb.UCSC.snp135common.hg19, FDb.UCSC.snp137common.hg19, gcapc, GenomicAlignments, GenomicFeatures, GenomicRanges, GenVisR, ggbio, gmapR, GRaNIE, GreyListChIP, GUIDEseq, Gviz, h5vc, HiCDCPlus, InPAS, IntEREst, IsoformSwitchAnalyzeR, karyoploteR, maftools, MEDIPS, MesKit, methodical, MethReg, methrix, MinimumDistance, MiRaGE, motifbreakR, motifmatchr, motifTestR, MutationalPatterns, ORFik, OrganismDbi, pageRank, pipeFrame, plotgardener, plyranges, ProteoDisco, qsea, R453Plus1Toolbox, REMP, rGADEM, RiboCrypt, RiboProfiling, Rsamtools, RSVSim, rtracklayer, SGSeq, signeR, SigsPack, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP155.GRCh37, StructuralVariantAnnotation, supersigs, svaNUMT, UMI4Cats, VariantAnnotation, wavClusteR, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Hsapiens.UCSC.hg19_1.4.3.tar.gz
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macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/
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