RiboCrypt

DOI: 10.18129/B9.bioc.RiboCrypt    

This is the development version of RiboCrypt; for the stable release version, see RiboCrypt.

Interactive visualization in genomics

Bioconductor version: Development (3.15)

R Package for interactive visualization and browsing NGS data. It contains a browser for both transcript and genomic coordinate view. In addition a QC and general metaplots are included, among others differential translation plots and gene expression plots. The package is still under development.

Author: Michal Swirski [aut, cre], Haakon Tjeldnes [ctb]

Maintainer: Michal Swirski <michal.swirski at uw.edu.pl>

Citation (from within R, enter citation("RiboCrypt")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RiboCrypt")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RiboCrypt")

 

HTML R Script RiboCrypt_overview.html
PDF   Reference Manual
Text   LICENSE

Details

biocViews RNASeq, RiboSeq, Sequencing, Software
Version 1.1.0
In Bioconductor since BioC 3.14 (R-4.1) (< 6 months)
License MIT + file LICENSE
Depends R (>= 3.6.0), ORFik(>= 1.13.12)
Imports BiocGenerics, BiocParallel, Biostrings, data.table, dplyr, GenomeInfoDb, GenomicFeatures, GenomicRanges, ggplot2, IRanges, plotly, rlang
LinkingTo
Suggests testthat, rmarkdown, knitr, BiocStyle, BSgenome, BSgenome.Hsapiens.UCSC.hg19
SystemRequirements
Enhances
URL https://github.com/m-swirski/RiboCrypt
BugReports https://github.com/m-swirski/RiboCrypt/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RiboCrypt_1.1.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra) RiboCrypt_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RiboCrypt
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RiboCrypt
Package Short Url https://bioconductor.org/packages/RiboCrypt/
Package Downloads Report Download Stats

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